TissueCFM000033's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| transcription-coupled nucleotide-excision repair | 0.002024381 | GO:0006283 |
| maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter | 0.002024381 | GO:0001193 |
| transcription initiation from RNA polymerase II promoter | 0.00674395 | GO:0006367 |
| DNA-directed RNA polymerase II, core complex | 0.014158109 | GO:0005665 |
| proteasome core complex | 0.014158109 | GO:0005839 |
| cytoplasm | 0.022512909 | GO:0005737 |
| threonine-type endopeptidase activity | 0.024731382 | GO:0004298 |
| receptor signaling protein serine/threonine kinase activity | 0.024731382 | GO:0004702 |
| proteolysis involved in cellular protein catabolic process | 0.032242071 | GO:0051603 |
| DNA-directed RNA polymerase activity | 0.039837771 | GO:0003899 |
| Proteasome | 0.044715865 | KEGG pathway |
| MAPK signaling pathway - plant | 0.048868175 | KEGG pathway |
| Purine metabolism | 0.048868175 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002669 | AT5G08230 (9.00E-53) | Tudor/PWWP/MBT domain-containing protein |
| CRO_T008200 | - | - |
| CRO_T008201 | AT5G64680 (1.00E-04) | unknown protein |
| CRO_T022055 | AT1G63700 (2.00E-67) | EMB71|EMBRYO DEFECTIVE 71; MAPKKK4|MAP KINASE KINASE KINASE 4; YDA|YODA |
| CRO_T026659 | AT4G31300 (9.00E-14) | PBA1|N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein |
| CRO_T032823 | AT4G16265 (1.00E-56) | NRPB9B; NRPD9B; NRPE9B|RNA polymerases M/15 Kd subunit |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001528 | Protein_kinases_phosphatases, PPC:4.5.6: LAMMER Kinase Family SAGA complex BRISC complex BRCA1-A complex queuosine biosynthetic process positive regulation of DNA repair regulation of nucleic acid-templated transcription queuine tRNA-ribosyltransferase activity protein serine/threonine/tyrosine kinase activity transcription cofactor activity tRNA modification mRNA processing protein autophosphorylation Homologous recombination | details |
| TissueCFM001723 | nucleus regulation of transcription, DNA-templated organ boundary specification between lateral organs and the meristem ATP-dependent chromatin remodeling regulation of gene expression, epigenetic actin filament organization trichome morphogenesis multidimensional cell growth transcription, DNA-templated retrograde vesicle-mediated transport, Golgi to ER protein-cysteine S-palmitoyltransferase activity threonine-type endopeptidase activity DNA-dependent ATPase activity Proteasome Protein export Regulation of actin cytoskeleton SNARE interactions in vesicular transport proteasome core complex Transcription_related, Transcription regulator: SNF2 Ubiquitin_Proteasome_system, DUB: USP ER to Golgi vesicle-mediated transport positive regulation of transcription, DNA-templated chromatin binding | details |
| TissueCFM001769 | Lysosome clathrin adaptor complex carbohydrate binding | details |
| TissueCFM001840 | SAGA complex pre-mRNA branch point binding regulation of nucleic acid-templated transcription transcription cofactor activity mRNA splicing, via spliceosome small GTPase mediated signal transduction | details |
Expression profiles
 Show details about module gene expression profiling |