TissueCFM000267's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ubiquitin_Proteasome_system, E2: UBC | 1.90E-06 | ubs family |
| ubiquitin protein ligase binding | 3.07E-06 | GO:0031625 |
| ubiquitin protein ligase activity | 2.23E-05 | GO:0061630 |
| histone ubiquitination | 3.91E-05 | GO:0016574 |
| protein polyubiquitination | 0.001091843 | GO:0000209 |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 0.002076842 | GO:0043161 |
| DNA repair | 0.002076842 | GO:0006281 |
| ligase activity | 0.002136509 | GO:0016874 |
| Ubiquitin mediated proteolysis | 0.002821766 | KEGG pathway |
| regulation of cellular biosynthetic process | 0.004201983 | GO:0031326 |
| regulation of secondary metabolic process | 0.004201983 | GO:0043455 |
| regulation of cellular ketone metabolic process | 0.004201983 | GO:0010565 |
| Toll and Imd signaling pathway | 0.004923319 | KEGG pathway |
| UDP-glycosyltransferase activity | 0.005361494 | GO:0008194 |
| positive regulation of cellular process | 0.005514369 | GO:0048522 |
| regulation of primary metabolic process | 0.00653468 | GO:0080090 |
| protein K63-linked ubiquitination | 0.008819471 | GO:0070534 |
| postreplication repair | 0.009352741 | GO:0006301 |
| cytoplasm | 0.01011473 | GO:0005737 |
| mitochondrial respiratory chain complex III | 0.01011473 | GO:0005750 |
| mitochondrial electron transport, ubiquinol to cytochrome c | 0.011019942 | GO:0006122 |
| Zeatin biosynthesis | 0.03347762 | KEGG pathway |
| transferase activity, transferring hexosyl groups | 0.035249703 | GO:0016758 |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.041587608 | cazy family |
| Transcription_related, Transcription factor: B3 | 0.041587608 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004100 | AT3G15720 (2.00E-93) | Pectin lyase-like superfamily protein |
| CRO_T011526 | AT4G32010 (6.00E-16) | HSL1|HSI2-like 1; VAL2|VP1/ABI3-LIKE 2 |
| CRO_T011777 | AT4G10490 (9.00E-54) | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| CRO_T021818 | AT1G36340 (9.00E-24) | UBC31|ubiquitin-conjugating enzyme 31 |
| CRO_T021819 | AT1G36340 (4.00E-24) | UBC31|ubiquitin-conjugating enzyme 31 |
| CRO_T022760 | AT1G70650 (2.00E-51) | Ran BP2/NZF zinc finger-like superfamily protein |
| CRO_T025314 | AT2G36770 (2.00E-50) | UDP-Glycosyltransferase superfamily protein |
| CRO_T030384 | AT3G52730 (2.00E-18) | ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein |
| CRO_T030937 | - | - |
| CRO_T032765 | AT3G46450 (3.00E-105) | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000470 | nonphotochemical quenching mitochondrial electron transport, ubiquinol to cytochrome c toxin catabolic process glutathione metabolic process mitochondrial respiratory chain complex III glutathione transferase activity Glutathione metabolism electron carrier activity membrane part | details |
| TissueCFM000720 | Protein_kinases_phosphatases, PPC:1.1.1: Leucine-rich transmembrane protein kinase/Strubbelig Receptor Family 1 anthocyanin-containing compound biosynthetic process flavonoid 3',5'-hydroxylase activity electron transport chain oxidoreductase activity, acting on NAD(P)H hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) flavonoid biosynthesis (in equisetum) flavonol biosynthesis leucodelphinidin biosynthesis leucopelargonidin and leucocyanidin biosynthesis NAD/NADH phosphorylation and dephosphorylation syringetin biosynthesis Oxidative phosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |