TissueCFM000329's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| positive regulation of cyclin-dependent protein serine/threonine kinase activity | 0.009119644 | GO:0045737 |
| positive regulation of phosphorylation of RNA polymerase II C-terminal domain | 0.009119644 | GO:1901409 |
| positive regulation of transcription from RNA polymerase II promoter | 0.013887363 | GO:0045944 |
| formation of translation preinitiation complex | 0.015607131 | GO:0001731 |
| regulation of translational initiation | 0.015607131 | GO:0006446 |
| cyclin-dependent protein serine/threonine kinase regulator activity | 0.016076164 | GO:0016538 |
| translation initiation factor binding | 0.016076164 | GO:0031369 |
| protein kinase binding | 0.016076164 | GO:0019901 |
| response to salt stress | 0.019487306 | GO:0009651 |
| cyclin-dependent protein kinase holoenzyme complex | 0.022519938 | GO:0000307 |
| eukaryotic translation initiation factor 3 complex | 0.024888615 | GO:0005852 |
| eukaryotic 48S preinitiation complex | 0.024888615 | GO:0033290 |
| eukaryotic 43S preinitiation complex | 0.024888615 | GO:0016282 |
| RNA transport | 0.026828752 | KEGG pathway |
| intracellular part | 0.037816617 | GO:0044424 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001840 | AT3G02650 (1.00E-11) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T007129 | AT4G19600 (2.00E-19) | CYCT1|Cyclin family protein |
| CRO_T007136 | AT2G28910 (4.00E-47) | CXIP4|CAX interacting protein 4 |
| CRO_T013522 | AT5G25780 (3.00E-160) | EIF3B|EUKARYOTIC TRANSLATION INITIATION FACTOR 3B; EIF3B-2|eukaryotic translation initiation factor 3B-2 |
| CRO_T015786 | AT2G34080 (4.00E-20) | Cysteine proteinases superfamily protein |
| CRO_T029153 | AT5G11760 (3.00E-10) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001436 | proteasome complex Proteasome heterocyclic compound binding organic cyclic compound binding Spliceosome pre-mRNA 3'-splice site binding poly-pyrimidine tract binding Ubiquitin_Proteasome_system, DUB: JAMM rRNA primary transcript binding commitment complex U2AF nuclear speck nuclear matrix U2-type prespliceosome Mpp10 complex snoRNA binding mRNA processing rRNA processing proteasome-mediated ubiquitin-dependent protein catabolic process viral nucleocapsid intracellular part small-subunit processome mRNA surveillance pathway Ribosome biogenesis in eukaryotes | details |
Expression profiles
 Show details about module gene expression profiling |