TissueCFM000487's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| intracellular protein transport | 2.40E-05 | GO:0006886 |
| clathrin adaptor complex | 4.32E-05 | GO:0030131 |
| Lysosome | 9.57E-05 | KEGG pathway |
| protein transporter activity | 0.00039516 | GO:0008565 |
| phosphatidylethanolamine biosynthesis I | 0.000886394 | plantCyc |
| vesicle-mediated transport | 0.001002952 | GO:0016192 |
| histone methyltransferase activity (H3-K4 specific) | 0.002024381 | GO:0042800 |
| enzyme regulator activity | 0.004047566 | GO:0030234 |
| proteasome regulatory particle, lid subcomplex | 0.004827128 | GO:0008541 |
| Set1C/COMPASS complex | 0.005362682 | GO:0048188 |
| histone H3-K4 methylation | 0.006490548 | GO:0051568 |
| regulation of protein catabolic process | 0.006490548 | GO:0042176 |
| embryo development | 0.00830606 | GO:0009790 |
| transcription regulatory region DNA binding | 0.00859409 | GO:0044212 |
| reproductive structure development | 0.008650868 | GO:0048608 |
| Ran GTPase binding | 0.008894124 | GO:0008536 |
| post-embryonic development | 0.015558911 | GO:0009791 |
| Proteasome | 0.022357933 | KEGG pathway |
| regulation of catalytic activity | 0.023958316 | GO:0050790 |
| ubiquitin-dependent protein catabolic process | 0.037335078 | GO:0006511 |
| RNA transport | 0.049186045 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005129 | AT4G11380 (0) | Adaptin family protein |
| CRO_T012459 | AT3G13410 (3.00E-65) | unknown protein |
| CRO_T014088 | AT1G51450 (8.00E-112) | ASH2R|ARABIDOPSIS Ash2 RELATIVE; TRO|TRAUCO |
| CRO_T020985 | AT1G23900 (2.00E-54) | GAMMA-ADAPTIN 1|gamma-adaptin 1; Gamma-ADR|Gamma-adaptin |
| CRO_T024863 | AT5G17020 (9.00E-109) | ATXPO1|EXPORTIN 1; HIT2|HEAT-INTOLERANT 2; XPO1A|exportin 1A |
| CRO_T033712 | AT1G20200 (0) | EMB2719|EMBRYO DEFECTIVE 2719; HAP15|HAPLESS 15 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000612 | intracellular protein transport response to hypoxia Golgi apparatus phosphatidylethanolamine biosynthesis I Taurine and hypotaurine metabolism aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation clathrin adaptor complex Ran GTPase binding protein transporter activity NADH dehydrogenase (ubiquinone) activity cellular metabolic process single-organism cellular process Lysosome vesicle-mediated transport oxidation-reduction process | details |
Expression profiles
 Show details about module gene expression profiling |