TissueCFM000525's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| enoyl-CoA hydratase activity | 0.007897476 | GO:0004300 |
| 3-hydroxyacyl-CoA dehydrogenase activity | 0.007897476 | GO:0003857 |
| transferase activity, transferring phosphorus-containing groups | 0.007897476 | GO:0016772 |
| 3-hydroxyacyl-CoA dehydratase activity | 0.007897476 | GO:0018812 |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.012391922 | cazy family |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.012678098 | cazy family |
| fatty acid beta-oxidation | 0.013675424 | GO:0006635 |
| jasmonic acid biosynthetic process | 0.013675424 | GO:0009695 |
| ascorbate glutathione cycle | 0.01886995 | plantCyc |
| unsaturated, even numbered fatty acid β-oxidation | 0.01886995 | plantCyc |
| flower development | 0.019723642 | GO:0009908 |
| cellulose catabolic process | 0.019723642 | GO:0030245 |
| cellulase activity | 0.021033813 | GO:0008810 |
| fatty acid β-oxidation II (peroxisome) | 0.021991534 | plantCyc |
| jasmonic acid biosynthesis | 0.023537308 | plantCyc |
| mRNA binding | 0.025395587 | GO:0003729 |
| very long chain fatty acid biosynthesis II | 0.030997738 | plantCyc |
| protein disulfide oxidoreductase activity | 0.036714673 | GO:0015035 |
| Fatty acid metabolism | 0.037044196 | KEGG pathway |
| microtubule binding | 0.037343806 | GO:0008017 |
| cell redox homeostasis | 0.045919046 | GO:0045454 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T009338 | AT5G49720 (1.00E-94) | ATGH9A1|glycosyl hydrolase 9A1; DEC|DEFECTIVE CYTOKINESIS; IRX2|IRREGULAR XYLEM 2; KOR|KORRIGAN; KOR1|KORRIGAN 1; RSW2|RADIALLY SWOLLEN 2; TSD1|TUMOROUS SHOOT DEVELOPMENT 1 |
| CRO_T013090 | AT4G18975 (2.00E-52) | Pentatricopeptide repeat (PPR) superfamily protein |
| CRO_T013123 | AT3G06860 (8.00E-78) | ATMFP2|MULTIFUNCTIONAL PROTEIN 2 |
| CRO_T017048 | AT4G25200 (1.00E-16) | ATHSP23.6-MITO|mitochondrion-localized small heat shock protein 23.6 |
| CRO_T019719 | AT2G45330 (5.00E-69) | emb1067|embryo defective 1067; TRPT|2' tRNA phosphotransferase |
| CRO_T028054 | - | - |
| CRO_T029336 | AT3G62950 (4.00E-24) | Thioredoxin superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000482 | Meiosis - yeast positive regulation of autophagy DNA catabolic process, endonucleolytic RNA biosynthetic process hexose transmembrane transport DNA topological change glucose import DNA topoisomerase complex (ATP-hydrolyzing) chloroplast inner membrane chromosome DNA topoisomerase type II (ATP-hydrolyzing) activity DNA-directed RNA polymerase activity identical protein binding sugar:proton symporter activity glucose transmembrane transporter activity | details |
| TissueCFM000825 | Spliceosome transmembrane transport | details |
| TissueCFM001175 | 3-hydroxyacyl-CoA dehydratase activity chromatin DNA binding enoyl-CoA hydratase activity negative regulation of transposition negative regulation of histone acetylation pollen wall assembly positive regulation of histone H3-K9 dimethylation 3-hydroxyacyl-CoA dehydrogenase activity jasmonic acid biosynthetic process fatty acid beta-oxidation Fatty acid metabolism gentiodelphin biosynthesis pelargonidin conjugates biosynthesis salvianin biosynthesis shisonin biosynthesis unsaturated, even numbered fatty acid β-oxidation flower development vegetative to reproductive phase transition of meristem mRNA binding fatty acid β-oxidation II (peroxisome) jasmonic acid biosynthesis microtubule binding very long chain fatty acid biosynthesis II Photosynthesis | details |
| TissueCFM001190 | nucleic acid phosphodiester bond hydrolysis endonuclease activity Protein processing in endoplasmic reticulum | details |
Expression profiles
 Show details about module gene expression profiling |