TissueCFM000596's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| redox enzymes that act in conjunction with CAZymes, Auxiliary Activities: AA7 | 0.001063594 | cazy family |
| catalytic activity | 0.037012911 | GO:0003824 |
| carbohydrate metabolic process | 0.0428413 | GO:0005975 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003047 | - | - |
| CRO_T003265 | AT4G02250 (2.00E-15) | Plant invertase/pectin methylesterase inhibitor superfamily protein |
| CRO_T004490 | AT1G56580 (4.00E-42) | SVB|SMALLER WITH VARIABLE BRANCHES |
| CRO_T006363 | AT1G67290 (1.00E-126) | GLOX1|glyoxal oxidase 1 |
| CRO_T013793 | AT5G49150 (0) | GEX2|gamete expressed 2 |
| CRO_T021397 | AT5G11280 (9.00E-20) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000480 | L-valine transaminase activity L-leucine transaminase activity methylenetetrahydrofolate reductase (NAD(P)H) activity L-isoleucine transaminase activity methionine metabolic process branched-chain amino acid metabolic process plant-type cell wall organization or biogenesis tetrahydrofolate interconversion L-isoleucine biosynthesis I (from threonine) L-isoleucine degradation I L-leucine biosynthesis L-valine biosynthesis L-leucine degradation I galactosyltransferase activity folate transformations II L-valine degradation I ajmaline and sarpagine biosynthesis protein glycosylation Indole alkaloid biosynthesis 2-Oxocarboxylic acid metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TissueCFM000719 | isoamylase activity methylenetetrahydrofolate reductase (NAD(P)H) activity folate transformations II formation of glycosidic bonds, GlycosylTransferases: GTnc dolichyl-diphosphooligosaccharide-protein glycotransferase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc glycogen metabolic process post-translational protein modification protein N-linked glycosylation via asparagine methionine metabolic process tetrahydrofolate interconversion endoplasmic reticulum lumen oligosaccharyltransferase complex Transcription_related, Transcription factor: B3 | details |
| TissueCFM001559 | Ubiquitin_Proteasome_system, E3: U-box Ubiquitin_Proteasome_system, E3: RING regulation of methylation-dependent chromatin silencing plant-type cell wall organization or biogenesis maintenance of DNA methylation branched-chain amino acid metabolic process nuclear heterochromatin L-leucine transaminase activity L-valine transaminase activity L-isoleucine transaminase activity negative regulation of ethylene-activated signaling pathway ethylene binding leucopelargonidin and leucocyanidin biosynthesis L-isoleucine biosynthesis I (from threonine) L-isoleucine degradation I L-leucine biosynthesis L-leucine degradation I L-valine biosynthesis L-valine degradation I signal transduction by protein phosphorylation Indole alkaloid biosynthesis ajmaline and sarpagine biosynthesis phosphorelay signal transduction system phosphorelay sensor kinase activity histone binding coenzyme binding zinc ion binding 2-Oxocarboxylic acid metabolism Phenylpropanoid biosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |