TissueCFM000599's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cellular phosphate ion homeostasis | 0.001462766 | GO:0030643 |
| glycerophospholipid catabolic process | 0.001462766 | GO:0046475 |
| cation transmembrane transport | 0.005520291 | GO:0098655 |
| glycerophosphodiester phosphodiesterase activity | 0.009105005 | GO:0008889 |
| cation-transporting ATPase activity | 0.009105005 | GO:0019829 |
| metal ion binding | 0.025518867 | GO:0046872 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005446 | AT3G20340 (5.00E-07) | Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. |
| CRO_T009706 | AT1G07670 (0) | ECA4|endomembrane-type CA-ATPase 4 |
| CRO_T016742 | AT3G55470 (2.00E-19) | Calcium-dependent lipid-binding (CaLB domain) family protein |
| CRO_T017083 | AT3G58480 (2.00E-148) | calmodulin-binding family protein |
| CRO_T029321 | AT4G15975 (4.00E-21) | RING/U-box superfamily protein |
| CRO_T031011 | AT3G02040 (5.00E-141) | GDPD1|Glycerophosphodiester phosphodiesterase 1; SRG3|senescence-related gene 3 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000124 | NF-kappa B signaling pathway Protein_kinases_phosphatases, PPC:1.5.2: LRK10 Like Kinase (Type 1) Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase pyruvate fermentation to lactate vindoline and vinblastine biosynthesis | details |
| TissueCFM000481 | THO complex part of transcription export complex nucleoplasmic THO complex chromosome, telomeric region Vitamin B6 metabolism cinnamate esters biosynthesis coniferin metabolism coumarin biosynthesis (via 2-coumarate) salicylate glucosides biosynthesis IV scopolin biosynthesis RISC complex superpathway of scopolin and esculin biosynthesis RNA phosphodiester bond hydrolysis glycerophospholipid catabolic process transcription elongation from RNA polymerase II promoter mRNA export from nucleus production of siRNA involved in RNA interference cellular phosphate ion homeostasis entrainment of circadian clock choline biosynthesis I chromatin response to UV-B mRNA processing quercetin glucoside biosynthesis (Allium) photoreceptor activity glycerophosphodiester phosphodiesterase activity ribonuclease III activity quercetin gentiotetraside biosynthesis phosphatase activity transferase activity, transferring hexosyl groups chromatin binding protein transport RNA transport formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TissueCFM000600 | MAPK signaling pathway - plant glycerophospholipid catabolic process cellular phosphate ion homeostasis regulation of pentose-phosphate shunt positive regulation of ATPase activity glycolysis I (from glucose 6-phosphate) regulation of protein serine/threonine phosphatase activity gluconeogenesis 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity ATPase activator activity protein phosphatase inhibitor activity glycerophosphodiester phosphodiesterase activity receptor activity cation-transporting ATPase activity abscisic acid binding cation transmembrane transport chaperone binding Protein_kinases_phosphatases, PPC:4.2.6: IRE/NPH/PI dependent/S6 Kinase glycolytic process | details |
| TissueCFM000964 | vindoline and vinblastine biosynthesis Cytochrome_P450, Cytochrome P450: CYP71B oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen monooxygenase activity glycerophospholipid catabolic process cellular phosphate ion homeostasis Glutathione metabolism RNA phosphodiester bond hydrolysis production of siRNA involved in RNA interference entrainment of circadian clock glycerophosphodiester phosphodiesterase activity heme binding photoreceptor activity iron ion binding response to UV-B ribonuclease III activity RISC complex chromatin toxin catabolic process glutathione metabolic process chromatin binding glutathione transferase activity protein homodimerization activity cytoplasm | details |
Expression profiles
 Show details about module gene expression profiling |