TissueCFM000706's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| diacylglycerol cholinephosphotransferase activity | 0.002145549 | GO:0004142 |
| ethanolaminephosphotransferase activity | 0.002145549 | GO:0004307 |
| phosphatidyltransferase activity | 0.002145549 | GO:0030572 |
| Ubiquitin_Proteasome_system, DUB: JAMM | 0.002480253 | ubs family |
| phosphatidylethanolamine biosynthetic process | 0.004048762 | GO:0006646 |
| rRNA primary transcript binding | 0.004826058 | GO:0042134 |
| diacylglycerol biosynthesis (PUFA enrichment in oilseed) | 0.005057962 | plantCyc |
| phosphatidylcholine biosynthesis I | 0.005057962 | plantCyc |
| phosphatidylcholine biosynthesis II | 0.005057962 | plantCyc |
| phosphatidylethanolamine biosynthesis II | 0.005057962 | plantCyc |
| choline biosynthesis III | 0.006067313 | plantCyc |
| vacuolar proton-transporting V-type ATPase, V1 domain | 0.008834747 | GO:0000221 |
| Golgi apparatus | 0.008834747 | GO:0005794 |
| hydrogen ion transmembrane transporter activity | 0.010713484 | GO:0015078 |
| snoRNA binding | 0.010713484 | GO:0030515 |
| nuclear matrix | 0.011773572 | GO:0016363 |
| plant-type vacuole | 0.011773572 | GO:0000325 |
| Mpp10 complex | 0.011773572 | GO:0034457 |
| proteasome complex | 0.016670602 | GO:0000502 |
| unidimensional cell growth | 0.020690202 | GO:0009826 |
| ATP hydrolysis coupled proton transport | 0.020690202 | GO:0015991 |
| rRNA processing | 0.020690202 | GO:0006364 |
| proteasome-mediated ubiquitin-dependent protein catabolic process | 0.022984358 | GO:0043161 |
| viral nucleocapsid | 0.028542303 | GO:0019013 |
| Glycerophospholipid metabolism | 0.041209474 | KEGG pathway |
| Proteasome | 0.041209474 | KEGG pathway |
| Ribosome biogenesis in eukaryotes | 0.04161083 | KEGG pathway |
| small-subunit processome | 0.042528113 | GO:0032040 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005028 | AT1G63780 (3.00E-83) | IMP4|Ribosomal RNA processing Brix domain protein |
| CRO_T009171 | AT1G13560 (6.00E-103) | AAPT1|aminoalcoholphosphotransferase 1 |
| CRO_T020052 | AT1G31175 (3.00E-23) | unknown protein |
| CRO_T027844 | AT3G45750 (2.00E-11) | Nucleotidyltransferase family protein |
| CRO_T029335 | AT1G12840 (4.00E-154) | ATVHA-C|VACUOLAR ATP SYNTHASE SUBUNIT C; DET3|DE-ETIOLATED 3 |
| CRO_T033225 | AT3G11270 (4.00E-157) | MEE34|maternal effect embryo arrest 34 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001436 | proteasome complex Proteasome heterocyclic compound binding organic cyclic compound binding Spliceosome pre-mRNA 3'-splice site binding poly-pyrimidine tract binding Ubiquitin_Proteasome_system, DUB: JAMM rRNA primary transcript binding commitment complex U2AF nuclear speck nuclear matrix U2-type prespliceosome Mpp10 complex snoRNA binding mRNA processing rRNA processing proteasome-mediated ubiquitin-dependent protein catabolic process viral nucleocapsid intracellular part small-subunit processome mRNA surveillance pathway Ribosome biogenesis in eukaryotes | details |
| TissueCFM001466 | Ubiquitin_Proteasome_system, DUB: JAMM Spliceosome poly-pyrimidine tract binding pre-mRNA 3'-splice site binding rRNA primary transcript binding U2-type prespliceosome U2AF Mpp10 complex commitment complex nuclear speck nuclear matrix proteasome complex snoRNA binding Basal transcription factors Proteasome viral nucleocapsid membrane part cellular metabolic process mRNA processing regulation of signal transduction rRNA processing thylakoid proteasome-mediated ubiquitin-dependent protein catabolic process Ribosome biogenesis in eukaryotes small-subunit processome heterocyclic compound binding organic cyclic compound binding | details |
Expression profiles
 Show details about module gene expression profiling |