TissueCFM000707's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Cell cycle | 0.021218509 | KEGG pathway |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.035293061 | ubs family |
| RNA transport | 0.040243127 | KEGG pathway |
| RNA binding | 0.048129771 | GO:0003723 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000003 | AT1G49910 (4.00E-146) | BUB3.2|BUB (BUDDING UNINHIBITED BY BENZYMIDAZOL) 3.2 |
| CRO_T005348 | AT5G38840 (5.00E-142) | SMAD/FHA domain-containing protein |
| CRO_T012214 | - | - |
| CRO_T013831 | AT2G39260 (0) | binding; RNA binding |
| CRO_T024728 | AT4G01200 (1.00E-45) | Calcium-dependent lipid-binding (CaLB domain) family protein |
| CRO_T030173 | AT1G10030 (3.00E-42) | ERG28|homolog of yeast ergosterol28 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001339 | Transcription_related, Transcription factor: C3H protein catabolic process small GTPase mediated signal transduction intracellular aspartic-type endopeptidase activity | details |
| TissueCFM001453 | Cell cycle Protein_kinases_phosphatases, PPC:4.3.1: Unknown Function Kinase Transcription_related, Transcription factor: E2F-DP chromosome condensation condensed chromosome mitotic nuclear division Cell cycle - yeast intracellular part RNA transport | details |
| TissueCFM001715 | small GTPase mediated signal transduction RNA transport | details |
Expression profiles
 Show details about module gene expression profiling |