TissueCFM000738's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| pyrimidine ribonucleosides salvage I | 0.002126245 | plantCyc |
| defense response, incompatible interaction | 0.00347492 | GO:0009814 |
| UMP biosynthetic process | 0.00347492 | GO:0006222 |
| enzyme-directed rRNA pseudouridine synthesis | 0.00347492 | GO:0000455 |
| pyrimidine nucleobase metabolic process | 0.004168672 | GO:0006206 |
| pyrimidine nucleoside salvage | 0.004168672 | GO:0043097 |
| deaminase activity | 0.011560223 | GO:0019239 |
| uridine kinase activity | 0.011560223 | GO:0004849 |
| pyrophosphatase activity | 0.011560223 | GO:0016462 |
| pseudouridine synthase activity | 0.014443874 | GO:0009982 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001127 | AT4G21770 (6.00E-174) | Pseudouridine synthase family protein |
| CRO_T002086 | AT1G23400 (2.00E-149) | ATCAF2|HOMOLOG OF MAIZE CAF2 |
| CRO_T005304 | AT4G37300 (6.00E-18) | MEE59|maternal effect embryo arrest 59 |
| CRO_T015528 | AT1G32580 (3.00E-80) | plastid developmental protein DAG, putative |
| CRO_T018727 | AT2G01460 (2.00E-45) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T018749 | AT1G26180 (6.00E-63) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000396 | 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis histone methyltransferase activity (H3-K36 specific) red or far-red light signaling pathway regulation of circadian rhythm entrainment of circadian clock response to red light histone H3-K36 methylation histone H3-K36 demethylation photoperiodism, flowering positive regulation of circadian rhythm xylogalacturonan biosynthesis Circadian rhythm Thiamine metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription regulator: Jumonji regulation of flower development Glutathione metabolism metallopeptidase activity protein homodimerization activity | details |
| TissueCFM000566 | Thiamine metabolism 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis superpathway of thiamine diphosphate biosynthesis III (eukaryotes) thiazole biosynthesis III (eukaryotes) thiazole biosynthetic process chlororespiration enzyme-directed rRNA pseudouridine synthesis thiamine biosynthetic process Protein_kinases_phosphatases, PPC:1.3.3: Leucine Rich Repeat Receptor Kinase I & Unknown Receptor Kinase I Transcription_related, Transcription factor: SBP adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 amyloplast chloroplast stroma | details |
| TissueCFM000662 | enzyme-directed rRNA pseudouridine synthesis xylogalacturonan biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc nucleotide binding deaminase activity pseudouridine synthase activity | details |
| TissueCFM000692 | Thiamine metabolism hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis superpathway of thiamine diphosphate biosynthesis III (eukaryotes) thiazole biosynthesis III (eukaryotes) thiamine biosynthetic process red or far-red light signaling pathway photoperiodism, flowering entrainment of circadian clock thiazole biosynthetic process maltose catabolic process response to red light positive regulation of circadian rhythm glycogen metabolic process sucrose biosynthesis II starch binding heteropolysaccharide binding 4-alpha-glucanotransferase activity regulation of flower development cytosol response to stress Starch and sucrose metabolism | details |
| TissueCFM000739 | pyrimidine ribonucleosides salvage I enzyme-directed rRNA pseudouridine synthesis defense response, incompatible interaction UMP biosynthetic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc pyrimidine nucleobase metabolic process pyrimidine nucleoside salvage Phagosome microtubule-based process deaminase activity pyrophosphatase activity uridine kinase activity organic substance metabolic process structural constituent of cytoskeleton pseudouridine synthase activity Starch and sucrose metabolism | details |
| TissueCFM000919 | Transcription_related, Transcription regulator: LIM Phagosome pyrimidine ribonucleosides salvage I UMP biosynthetic process defense response, incompatible interaction pyrimidine nucleoside salvage pyrimidine nucleobase metabolic process pyrophosphatase activity ferredoxin-NADP+ reductase activity photosynthesis light reactions microtubule-based process uridine kinase activity structural constituent of cytoskeleton Photosynthesis | details |
Expression profiles
 Show details about module gene expression profiling |