TissueCFM000810's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Basal transcription factors | 0.000123708 | KEGG pathway |
| transcription factor TFIIE complex | 0.002925532 | GO:0005673 |
| polyribonucleotide nucleotidyltransferase activity | 0.009654255 | GO:0004654 |
| RNA phosphodiester bond hydrolysis, exonucleolytic | 0.010785556 | GO:0090503 |
| mRNA catabolic process | 0.010785556 | GO:0006402 |
| DNA-templated transcription, initiation | 0.010785556 | GO:0006352 |
| transcription initiation from RNA polymerase II promoter | 0.010785556 | GO:0006367 |
| protein refolding | 0.010785556 | GO:0042026 |
| 3'-5'-exoribonuclease activity | 0.016082105 | GO:0000175 |
| DNA binding | 0.024665631 | GO:0003677 |
| translational initiation | 0.030174052 | GO:0006413 |
| RNA processing | 0.030174052 | GO:0006396 |
| RNA degradation | 0.035892792 | KEGG pathway |
| Purine metabolism | 0.048868175 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002104 | AT1G32230 (2.00E-14) | ATP8|P8 (INTERACTING PROTEIN); RCD1|RADICAL-INDUCED CELL DEATH1 |
| CRO_T006732 | AT3G03710 (0) | PDE326|PIGMENT DEFECTIVE 326; PNP|POLYNUCLEOTIDE PHOSPHORYLASE; RIF10|resistant to inhibition with FSM 10 |
| CRO_T009377 | AT1G26230 (0) | Cpn60beta4|chaperonin-60beta4 |
| CRO_T009856 | AT4G20330 (6.00E-98) | Transcription initiation factor TFIIE, beta subunit |
| CRO_T012240 | - | - |
| CRO_T029429 | AT1G55520 (2.00E-63) | ATTBP2|A. THALIANA TATA BINDING PROTEIN 2; TBP2|TATA binding protein 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001827 | Carbon metabolism fatty acid biosynthesis initiation I octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) pyruvate decarboxylation to acetyl CoA Basal transcription factors soluble NSF attachment protein activity syntaxin binding DNA topological change chromosome segregation membrane fusion transcription initiation from RNA polymerase II promoter DNA unwinding involved in DNA replication DNA topoisomerase type II (ATP-hydrolyzing) activity acetyl-CoA carboxylase activity nucleoid transcription factor TFIIE complex DNA topoisomerase complex (ATP-hydrolyzing) acetyl-CoA carboxylase complex cytosolic ribosome DNA binding chromosome SNARE complex transferase activity, transferring acyl groups translational initiation fatty acid biosynthetic process | details |
| TissueCFM001847 | Carbon metabolism fatty acid biosynthesis initiation I octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) pyruvate decarboxylation to acetyl CoA transcription factor TFIIE complex acetyl-CoA carboxylase complex cytosolic ribosome Basal transcription factors transcription initiation from RNA polymerase II promoter acetyl-CoA carboxylase activity translational initiation vesicle-mediated transport fatty acid biosynthetic process | details |
Expression profiles
 Show details about module gene expression profiling |