TissueCFM000896's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| glutathione degradation | 0.001595745 | plantCyc |
| gamma-glutamyltransferase activity | 0.002698776 | GO:0003840 |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 0.002698776 | GO:0016810 |
| tRNA (guanine-N2-)-methyltransferase activity | 0.002698776 | GO:0004809 |
| S-methyl-5-thio-α-D-ribose 1-phosphate degradation | 0.003985826 | plantCyc |
| tRNA N2-guanine methylation | 0.005212381 | GO:0002940 |
| dicarboxylic acid metabolic process | 0.005212381 | GO:0043648 |
| Alanine, aspartate and glutamate metabolism | 0.00633397 | KEGG pathway |
| Arachidonic acid metabolism | 0.00633397 | KEGG pathway |
| maturation of SSU-rRNA | 0.007813951 | GO:0030490 |
| regulation of cell cycle | 0.007813951 | GO:0051726 |
| nitrogen compound metabolic process | 0.010412444 | GO:0006807 |
| glutathione metabolic process | 0.017328449 | GO:0006749 |
| small nucleolar ribonucleoprotein complex | 0.019265615 | GO:0005732 |
| Mpp10 complex | 0.019265615 | GO:0034457 |
| transferase activity, transferring acyl groups | 0.026722171 | GO:0016746 |
| Ribosome biogenesis in eukaryotes | 0.027463148 | KEGG pathway |
| viral nucleocapsid | 0.04359136 | GO:0019013 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000346 | AT4G39640 (2.00E-180) | GGT1|gamma-glutamyl transpeptidase 1 |
| CRO_T011159 | AT5G65420 (1.00E-21) | CYCD4; 1|CYCLIN D4; 1 |
| CRO_T018654 | - | - |
| CRO_T018724 | AT3G56330 (7.00E-147) | N2,N2-dimethylguanosine tRNA methyltransferase |
| CRO_T023477 | AT5G66540 (3.00E-30) | unknown protein |
| CRO_T025856 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000234 | glutathione degradation gamma-glutamyltransferase activity tRNA (guanine-N2-)-methyltransferase activity tRNA N2-guanine methylation maturation of SSU-rRNA Arachidonic acid metabolism glutathione metabolic process small nucleolar ribonucleoprotein complex Mpp10 complex Ribosome biogenesis in eukaryotes viral nucleocapsid small-subunit processome | details |
| TissueCFM000465 | Phenylpropanoid biosynthesis geraniol and geranial biosynthesis hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.6.2: Plant External Response Like Kinase polysaccharide catabolic process regulation of cell cycle maturation of SSU-rRNA small nucleolar ribonucleoprotein complex Mpp10 complex cinnamyl-alcohol dehydrogenase activity beta-amylase activity sinapyl alcohol dehydrogenase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor zinc ion binding Ribosome biogenesis in eukaryotes viral nucleocapsid small-subunit processome | details |
Expression profiles
 Show details about module gene expression profiling |