TissueCFM000973's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| O-acetyltransferase activity | 9.57E-05 | GO:0016413 |
| Golgi apparatus | 0.002067228 | GO:0005794 |
| DNA-3-methyladenine glycosylase activity | 0.003412112 | GO:0008725 |
| Transcription_related, Transcription regulator: AUX/IAA | 0.003541648 | TF family |
| Base excision repair | 0.012746164 | KEGG pathway |
| plant-type cell wall modification | 0.013542933 | GO:0009827 |
| integral component of membrane | 0.024030782 | GO:0016021 |
| pectin biosynthetic process | 0.029321347 | GO:0045489 |
| base-excision repair | 0.030057627 | GO:0006284 |
| cell wall organization or biogenesis | 0.035118091 | GO:0071554 |
| cellulose biosynthetic process | 0.035118091 | GO:0030244 |
| transporter activity | 0.038351981 | GO:0005215 |
| Plant hormone signal transduction | 0.042841753 | KEGG pathway |
| regulation of cellular process | 0.044953399 | GO:0050794 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000997 | AT1G33440 (0) | NPF4.4|NRT1/ PTR family 4.4 |
| CRO_T001101 | AT1G13635 (3.00E-93) | DNA glycosylase superfamily protein |
| CRO_T004852 | AT3G62390 (2.00E-66) | TBL6|TRICHOME BIREFRINGENCE-LIKE 6 |
| CRO_T007207 | AT3G07570 (3.00E-59) | Cytochrome b561/ferric reductase transmembrane with DOMON related domain |
| CRO_T013608 | AT4G14550 (5.00E-30) | IAA14|indole-3-acetic acid inducible 14; SLR|SOLITARY ROOT |
| CRO_T026286 | AT2G30900 (8.00E-77) | TBL43|TRICHOME BIREFRINGENCE-LIKE 43 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000776 | Protein_kinases_phosphatases, PPC:1.16.1: Receptor Like Cytoplasmic Kinase II peptide metabolic process Transcription_related, Transcription factor: C2C2-Dof cell wall organization or biogenesis Plant hormone signal transduction metalloendopeptidase activity O-acetyltransferase activity | details |
| TissueCFM000986 | Base excision repair non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 Transcription_related, Transcription factor: LOB DNA-3-methyladenine glycosylase activity base-excision repair lyase activity | details |
| TissueCFM001694 | Fanconi anemia pathway homogalacturonan degradation hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 aspartyl esterase activity pectinesterase activity carbohydrate transport pectin catabolic process cell wall modification electron carrier activity anchored component of plasma membrane integral component of membrane | details |
Expression profiles
 Show details about module gene expression profiling |