TissueCFM001077's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| regulation of nucleic acid-templated transcription | 0.003693308 | GO:1903506 |
| queuosine biosynthetic process | 0.003693308 | GO:0008616 |
| queuine tRNA-ribosyltransferase activity | 0.004875166 | GO:0008479 |
| SAGA complex | 0.006072695 | GO:0000124 |
| transcription cofactor activity | 0.006820695 | GO:0003712 |
| tRNA modification | 0.012783615 | GO:0006400 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004739 | AT4G09980 (4.00E-115) | EMB1691|EMBRYO DEFECTIVE 1691 |
| CRO_T014883 | AT5G11280 (1.00E-66) | unknown protein |
| CRO_T017297 | AT4G05460 (6.00E-20) | RNI-like superfamily protein |
| CRO_T023669 | AT5G55610 (1.00E-38) | unknown protein |
| CRO_T029979 | AT1G72390 (2.00E-17) | PHL|PHYTOCHROME-DEPENDENT LATE-FLOWERING |
| CRO_T033092 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001528 | Protein_kinases_phosphatases, PPC:4.5.6: LAMMER Kinase Family SAGA complex BRISC complex BRCA1-A complex queuosine biosynthetic process positive regulation of DNA repair regulation of nucleic acid-templated transcription queuine tRNA-ribosyltransferase activity protein serine/threonine/tyrosine kinase activity transcription cofactor activity tRNA modification mRNA processing protein autophosphorylation Homologous recombination | details |
| TissueCFM001789 | SAGA complex regulation of nucleic acid-templated transcription proteasome complex Proteasome Transcription_related, Transcription regulator: PHD transcription cofactor activity metal ion binding | details |
| TissueCFM001840 | SAGA complex pre-mRNA branch point binding regulation of nucleic acid-templated transcription transcription cofactor activity mRNA splicing, via spliceosome small GTPase mediated signal transduction | details |
Expression profiles
 Show details about module gene expression profiling |