TissueCFM001141's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ubiquitin_Proteasome_system, E3: HECT | 0.003541021 | ubs family |
| Platinum drug resistance | 0.006746741 | KEGG pathway |
| HTLV-I infection | 0.008430062 | KEGG pathway |
| thiamine salvage | 0.011001692 | GO:0036172 |
| sister chromatid segregation | 0.011001692 | GO:0000819 |
| mitotic DNA integrity checkpoint | 0.011001692 | GO:0044774 |
| mitotic chromosome condensation | 0.012828481 | GO:0007076 |
| resolution of meiotic recombination intermediates | 0.012828481 | GO:0000712 |
| DNA unwinding involved in DNA replication | 0.012828481 | GO:0006268 |
| Cell cycle - yeast | 0.013468386 | KEGG pathway |
| Thiamine metabolism | 0.013468386 | KEGG pathway |
| hydroxyethylthiazole kinase activity | 0.015046147 | GO:0004417 |
| mitotic recombination | 0.015111242 | GO:0006312 |
| DNA topological change | 0.015111242 | GO:0006265 |
| DNA topoisomerase complex (ATP-hydrolyzing) | 0.01754217 | GO:0009330 |
| condensed chromosome | 0.01754217 | GO:0000793 |
| nucleoid | 0.01754217 | GO:0009295 |
| benzoate biosynthesis I (CoA-dependent, β-oxidative) | 0.018464802 | plantCyc |
| chloroplast outer membrane | 0.024414251 | GO:0009707 |
| DNA topoisomerase type II (ATP-hydrolyzing) activity | 0.030068293 | GO:0003918 |
| chloroplast organization | 0.042602738 | GO:0009658 |
| protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 0.048708813 | GO:0042787 |
| microtubule-based movement | 0.048708813 | GO:0007018 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003548 | AT1G48280 (2.00E-75) | hydroxyproline-rich glycoprotein family protein |
| CRO_T011768 | AT5G37630 (4.00E-09) | EMB2656|EMBRYO DEFECTIVE 2656 |
| CRO_T013516 | AT5G47860 (2.00E-55) | Protein of unknown function (DUF1350) |
| CRO_T016290 | AT3G24030 (6.00E-102) | hydroxyethylthiazole kinase family protein |
| CRO_T021653 | - | - |
| CRO_T022611 | AT4G05190 (0) | ATK5|kinesin 5 |
| CRO_T024076 | AT1G76740 (2.00E-13) | unknown protein |
| CRO_T025887 | AT2G13720 (3.00E-12) | DNA topoisomerase (ATP-hydrolyzing)s; ATP binding; DNA binding |
| CRO_T028085 | AT5G16850 (3.00E-10) | ATTERT|telomerase reverse transcriptase |
| CRO_T032857 | AT1G55860 (2.00E-35) | UPL1|ubiquitin-protein ligase 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000537 | non-hydrolytic cleavage of glycosidic bonds, Polysaccharide Lyases: PL4 pectate lyase activity regulation of nucleobase-containing compound metabolic process homogentisate catabolic process tyrosine catabolic process pectin catabolic process positive regulation of chromatin organization trans, trans-farnesyl diphosphate biosynthesis geranylgeranyl diphosphate biosynthesis L-cysteine biosynthesis I polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) homogentisate 1,2-dioxygenase activity Z-farnesyl diphosphate synthase activity Atg8 ligase activity D-myo-inositol (1,4,5)-trisphosphate degradation farnesyl diphosphate biosynthetic process regulation of macromolecule metabolic process L-phenylalanine catabolic process mitotic chromosome condensation mitophagy nucleophagy Pentose and glucuronate interconversions Cell cycle - yeast RIG-I-like receptor signaling pathway Tyrosine metabolism autophagosome assembly condensed chromosome cytoplasmic ubiquitin ligase complex | details |
| TissueCFM000647 | Protein_kinases_phosphatases, PPC:1.17.1: Wall Associated Kinase L-ascorbate degradation IV L-ascorbate degradation V ascorbate glutathione cycle box C/D snoRNP assembly thiamine salvage L-iditol 2-dehydrogenase activity hydroxyethylthiazole kinase activity MAPK signaling pathway - yeast Pyruvate metabolism Thiamine metabolism | details |
| TissueCFM001831 | nucleolus nucleosome assembly nucleosome barrier septum site selection protein targeting to nuclear inner membrane regulation of endosperm development nuclear pore central transport channel nuclear pore organization Ubiquitin_Proteasome_system, E3: HECT chloroplast fission triacylglycerol degradation calcium-dependent ATPase activity NLS-bearing protein import into nucleus Viral carcinogenesis structural constituent of nuclear pore nucleocytoplasmic transporter activity response to water deprivation | details |
Expression profiles
 Show details about module gene expression profiling |