TissueCFM001172's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| NatB complex | 0.002955301 | GO:0031416 |
| Transcription_related, Transcription regulator: TRAF | 0.007307347 | TF family |
| Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box | 0.007307347 | ubs family |
| N-terminal peptidyl-methionine acetylation | 0.007819149 | GO:0017196 |
| hydroquinone:oxygen oxidoreductase activity | 0.011683984 | GO:0052716 |
| peptide alpha-N-acetyltransferase activity | 0.011683984 | GO:0004596 |
| single organism reproductive process | 0.012491241 | GO:0044702 |
| reproductive structure development | 0.012491241 | GO:0048608 |
| lignin catabolic process | 0.012491241 | GO:0046274 |
| post-embryonic development | 0.012491241 | GO:0009791 |
| Ubiquitin mediated proteolysis | 0.01638009 | KEGG pathway |
| Ubiquitin_Proteasome_system, E3 adaptor: BTB | 0.018776972 | ubs family |
| copper ion binding | 0.03227381 | GO:0005507 |
| apoplast | 0.047928798 | GO:0048046 |
| nucleus | 0.047928798 | GO:0005634 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001509 | AT5G58450 (0) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T015085 | AT3G06190 (9.00E-16) | ATBPM2|BTB-POZ AND MATH DOMAIN 2 |
| CRO_T016596 | AT3G04490 (1.00E-153) | unknown protein |
| CRO_T021718 | AT1G31280 (2.00E-86) | AGO2|argonaute 2 |
| CRO_T022972 | AT4G32050 (3.00E-152) | neurochondrin family protein |
| CRO_T023705 | AT4G21530 (2.00E-138) | APC4|anaphase promoting complex 4 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000747 | peptide-serine-N-acetyltransferase activity NatB complex NatA complex peptide-glutamate-N-acetyltransferase activity N-terminal peptidyl-glutamic acid acetylation N-terminal peptidyl-serine acetylation internal protein amino acid acetylation N-terminal peptidyl-methionine acetylation DNA topoisomerase type I activity cellular component organization reproductive structure development DNA topological change Transcription_related, Transcription regulator: TRAF Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box Transcription_related, Transcription regulator: GNAT cytosolic ribosome single organism reproductive process peptide alpha-N-acetyltransferase activity post-embryonic development hydroquinone:oxygen oxidoreductase activity lignin catabolic process Ubiquitin_Proteasome_system, E3 adaptor: BTB Regulation of actin cytoskeleton single-organism cellular process Homologous recombination Ubiquitin mediated proteolysis | details |
| TissueCFM001066 | N-terminal peptidyl-glutamic acid acetylation positive regulation of transcription from RNA polymerase I promoter internal protein amino acid acetylation N-terminal peptidyl-serine acetylation N-terminal peptidyl-methionine acetylation t-UTP complex NatB complex NatA complex peptide-glutamate-N-acetyltransferase activity peptide-serine-N-acetyltransferase activity cytosolic ribosome 90S preribosome Transcription_related, Transcription regulator: GNAT spliceosomal complex peptide alpha-N-acetyltransferase activity snoRNA binding hydroquinone:oxygen oxidoreductase activity lignin catabolic process Autophagy - yeast maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) mRNA splicing, via spliceosome small-subunit processome Ribosome biogenesis in eukaryotes | details |
Expression profiles
 Show details about module gene expression profiling |