TissueCFM001398's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| ascorbate glutathione cycle | 0.004251233 | plantCyc |
| L-ascorbate degradation V | 0.004251233 | plantCyc |
| Ascorbate and aldarate metabolism | 0.005308548 | KEGG pathway |
| transcription factor complex | 0.008502467 | GO:0005667 |
| Transcription_related, Transcription factor: C2C2-GATA | 0.010609255 | TF family |
| Transcription_related, Transcription factor: MYB-related | 0.010609255 | TF family |
| seed maturation | 0.020357124 | GO:0010431 |
| cell differentiation | 0.020357124 | GO:0030154 |
| seed germination | 0.020357124 | GO:0009845 |
| RNA polymerase II regulatory region sequence-specific DNA binding | 0.021823073 | GO:0000977 |
| transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 0.021823073 | GO:0001228 |
| RNA polymerase II transcription factor binding | 0.021823073 | GO:0001085 |
| chromatin binding | 0.038445918 | GO:0003682 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T007007 | AT1G73875 (2.00E-26) | DNAse I-like superfamily protein |
| CRO_T015580 | AT3G16230 (4.00E-92) | Predicted eukaryotic LigT |
| CRO_T017939 | AT3G53790 (8.00E-10) | TRFL4|TRF-like 4 |
| CRO_T024477 | - | - |
| CRO_T026240 | AT1G07890 (2.00E-22) | APX1|ascorbate peroxidase 1; MEE6|maternal effect embryo arrest 6 |
| CRO_T026274 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000535 | peroxisomal membrane hydroxymethylglutaryl-CoA reductase (NADPH) activity mevalonate pathway I Protein_kinases_phosphatases, PPC:1.1.1: Leucine-rich transmembrane protein kinase/Strubbelig Receptor Family 1 sterol biosynthetic process coenzyme A metabolic process Pyruvate metabolism isoprenoid biosynthetic process homogalacturonan degradation Terpenoid backbone biosynthesis Ubiquitin_Proteasome_system, DUB: OTU NADP binding | details |
| TissueCFM000647 | Protein_kinases_phosphatases, PPC:1.17.1: Wall Associated Kinase L-ascorbate degradation IV L-ascorbate degradation V ascorbate glutathione cycle box C/D snoRNP assembly thiamine salvage L-iditol 2-dehydrogenase activity hydroxyethylthiazole kinase activity MAPK signaling pathway - yeast Pyruvate metabolism Thiamine metabolism | details |
| TissueCFM000648 | ascorbate glutathione cycle L-ascorbate degradation V Ascorbate and aldarate metabolism Pyruvate metabolism phosphatidate metabolism, as a signaling molecule seed maturation seed germination chloroplast organization chloroplast stroma | details |
| TissueCFM000851 | L-ascorbate degradation IV L-ascorbate degradation V ascorbate glutathione cycle modulation by symbiont of host calcium or calmodulin-mediated signal transduction regulation of calcium or calmodulin-mediated signal transduction in response to host detection of calcium ion seed maturation calcium-mediated signaling regulation of photomorphogenesis cytoplasmic microtubule organization Transcription_related, Transcription factor: C2H2 oxidation-reduction process seed germination Ascorbate and aldarate metabolism MAPK signaling pathway - yeast Ras signaling pathway L-iditol 2-dehydrogenase activity | details |
Expression profiles
 Show details about module gene expression profiling |