TissueCFM001454's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:4.5.3: Casein Kinase II Family | 0.001772473 | kinase family |
| Transcription_related, Transcription factor: Alfin-like | 0.001772473 | TF family |
| RNA binding | 0.016541417 | GO:0003723 |
| hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 0.016541417 | GO:0016811 |
| nucleotide-excision repair | 0.019683965 | GO:0006289 |
| damaged DNA binding | 0.025685788 | GO:0003684 |
| histone binding | 0.025685788 | GO:0042393 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002682 | AT1G27960 (2.00E-78) | ECT9|evolutionarily conserved C-terminal region 9 |
| CRO_T013598 | AT3G23700 (4.00E-24) | Nucleic acid-binding proteins superfamily |
| CRO_T015335 | AT4G37550 (0) | Acetamidase/Formamidase family protein |
| CRO_T015344 | AT2G23080 (2.00E-139) | CKA3|casein kinase II, alpha chain 3 |
| CRO_T021796 | AT5G20510 (6.00E-86) | AL5|alfin-like 5 |
| CRO_T023122 | AT1G16190 (8.00E-24) | RAD23A|RADIATION SENSITIVE23A |
| CRO_T024342 | AT1G15490 (1.00E-26) | alpha/beta-Hydrolases superfamily protein |
| CRO_T033375 | AT3G01920 (1.00E-96) | DHBP synthase RibB-like alpha/beta domain |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000820 | Transcription_related, Transcription factor: Alfin-like Amyotrophic lateral sclerosis (ALS) sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II sucrose-phosphate phosphatase activity sucrose biosynthetic process removal of superoxide radicals exocytosis vesicle fusion zinc ion binding SNAP receptor activity histone binding superoxide dismutase activity SNARE binding Starch and sucrose metabolism SNARE complex | details |
| TissueCFM001207 | Transcription_related, Transcription factor: Alfin-like Amyotrophic lateral sclerosis (ALS) sucrose biosynthesis I (from photosynthesis) sucrose biosynthesis II sucrose-phosphate phosphatase activity sucrose biosynthetic process small ribosomal subunit rRNA binding superoxide dismutase activity removal of superoxide radicals histone binding SNAP receptor activity zinc ion binding SNARE binding exocytosis vesicle fusion | details |
| TissueCFM001781 | calcium-dependent cysteine-type endopeptidase activity nucleotide-excision repair vacuolar proton-transporting V-type ATPase complex assembly endoplasmic reticulum-Golgi intermediate compartment membrane damaged DNA binding COPII vesicle coat very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II proteasome-mediated ubiquitin-dependent protein catabolic process Fatty acid metabolism Plant-pathogen interaction | details |
Expression profiles
 Show details about module gene expression profiling |