TissueCFM001505's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| ESCRT I complex | 0.001329591 | GO:0000813 |
| transcription factor TFIID complex | 0.001329591 | GO:0005669 |
| transcription factor binding | 0.003854832 | GO:0008134 |
| protein complex binding | 0.003854832 | GO:0032403 |
| histone acetyltransferase binding | 0.003854832 | GO:0035035 |
| DNA (cytosine-5-)-methyltransferase activity | 0.003854832 | GO:0003886 |
| RNA polymerase II transcriptional preinitiation complex assembly | 0.006434743 | GO:0051123 |
| C-5 methylation of cytosine | 0.006434743 | GO:0090116 |
| protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway | 0.006434743 | GO:0043328 |
| regulation of biological process | 0.008844504 | GO:0050789 |
| transcription coactivator activity | 0.010911537 | GO:0003713 |
| transcription regulatory region DNA binding | 0.010911537 | GO:0044212 |
| Basal transcription factors | 0.020419798 | KEGG pathway |
| Cysteine and methionine metabolism | 0.020419798 | KEGG pathway |
| chromatin binding | 0.021969096 | GO:0003682 |
| regulation of transcription from RNA polymerase II promoter | 0.021993623 | GO:0006357 |
| single-organism process | 0.021993623 | GO:0044699 |
| DNA replication | 0.021993623 | KEGG pathway |
| Endocytosis | 0.03227381 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005208 | AT1G52330 (2.00E-31) | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| CRO_T012406 | AT1G55300 (2.00E-56) | TAF7|TBP-associated factor 7 |
| CRO_T015673 | AT4G32700 (0) | helicases; ATP-dependent helicases; nucleic acid binding; ATP binding; DNA-directed DNA polymerases; DNA binding |
| CRO_T017641 | AT4G08990 (0) | DNA (cytosine-5-)-methyltransferase family protein |
| CRO_T021417 | AT4G05000 (1.00E-91) | VPS28-1|vacuolar protein sorting-associated protein 28 homolog 1 |
| CRO_T033450 | AT1G31810 (0) | AFH14|Formin Homology 14 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001344 | seed maturation pyruvate kinase activity potassium ion binding glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt glycolytic process fatty acid biosynthetic process magnesium ion binding nucleoside binding kinase activity Carbon metabolism alpha DNA polymerase:primase complex chloroplast stroma leading strand elongation formation of glycosidic bonds, GlycosylTransferases: GTnc lagging strand elongation double-strand break repair via nonhomologous end joining DNA replication initiation mitochondrion DNA biosynthetic process DNA-directed DNA polymerase activity 3'-5' exonuclease activity Golgi membrane nucleic acid phosphodiester bond hydrolysis Purine metabolism | details |
| TissueCFM001397 | Transcription_related, Transcription regulator: SWI/SNF-SWI3 formation of glycosidic bonds, GlycosylTransferases: GTnc spermine and spermidine degradation III plant sterol biosynthesis Ubiquitin_Proteasome_system, DUB: USP steroid biosynthetic process histone H3-K4 methylation protein deubiquitination Steroid biosynthesis 3-beta-hydroxy-delta5-steroid dehydrogenase activity thiol-dependent ubiquitinyl hydrolase activity Spliceosome Golgi membrane integral component of membrane oxidation-reduction process cell wall organization | details |
| TissueCFM001718 | ESCRT I complex transcription factor TFIID complex C-5 methylation of cytosine protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway RNA polymerase II transcriptional preinitiation complex assembly histone acetyltransferase binding DNA (cytosine-5-)-methyltransferase activity protein complex binding transcription factor binding transcription coactivator activity transcription regulatory region DNA binding Cellular senescence regulation of transcription from RNA polymerase II promoter chromatin binding Basal transcription factors Cysteine and methionine metabolism Endocytosis | details |
Expression profiles
 Show details about module gene expression profiling |