TissueCFM001545's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| acetyl-CoA biosynthesis III (from citrate) | 0.001063751 | plantCyc |
| superpathway of acetyl-CoA biosynthesis | 0.001063751 | plantCyc |
| Citrate cycle (TCA cycle) | 0.002127502 | KEGG pathway |
| succinate-CoA ligase (ADP-forming) activity | 0.012871389 | GO:0004775 |
| histone acetyltransferase activity | 0.018216961 | GO:0004402 |
| protein disulfide isomerase activity | 0.018216961 | GO:0003756 |
| RNA splicing | 0.020357124 | GO:0008380 |
| histone acetylation | 0.020357124 | GO:0016573 |
| response to endoplasmic reticulum stress | 0.020357124 | GO:0034976 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.035293061 | ubs family |
| lyase activity | 0.036890589 | GO:0016829 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000473 | - | - |
| CRO_T002476 | AT5G64610 (8.00E-43) | HAM1|histone acetyltransferase of the MYST family 1 |
| CRO_T014672 | AT1G77510 (4.00E-48) | ATPDI6|PROTEIN DISULFIDE ISOMERASE 6; ATPDIL1-2|PDI-like 1-2 |
| CRO_T015269 | AT5G09225 (4.00E-12) | unknown protein |
| CRO_T029523 | AT1G09430 (0) | ACLA-3|ATP-citrate lyase A-3 |
| CRO_T033072 | AT3G49660 (6.00E-22) | WDR5a|human WDR5 (WD40 repeat) homolog a |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000583 | stachyose biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc protein targeting to ER mitochondrial electron transport, ubiquinol to cytochrome c cytoskeleton organization cell morphogenesis mitochondrial respiratory chain complex III assembly mitotic spindle assembly checkpoint mitochondrial respiratory chain complex III signal recognition particle, endoplasmic reticulum targeting nuclear envelope histone acetylation aerobic respiration ubiquinol-cytochrome-c reductase activity signal recognition particle binding histone acetyltransferase activity abscisic acid binding Cell cycle Galactose metabolism Protein export actin binding hydrogen ion transmembrane transport response to abscisic acid | details |
| TissueCFM000988 | serine O-acetyltransferase activity L-cysteine biosynthesis I seleno-amino acid biosynthesis Transcription_related, Transcription regulator: SET translation elongation factor activity single-organism process translational elongation cysteine biosynthetic process from serine cytoplasmic, membrane-bounded vesicle | details |
| TissueCFM001129 | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity dihydropteroate synthase activity serine O-acetyltransferase activity Transcription_related, Transcription regulator: MBF1 pectin biosynthetic process cysteine biosynthetic process from serine folic acid-containing compound biosynthetic process 6-hydroxymethyl-dihydropterin diphosphate biosynthesis I L-cysteine biosynthesis I seleno-amino acid biosynthesis homogalacturonan biosynthesis tetrahydrofolate biosynthesis II polygalacturonate 4-alpha-galacturonosyltransferase activity Folate biosynthesis cytoplasm microtubule cytoskeleton cytoskeletal part cytoplasmic, membrane-bounded vesicle | details |
| TissueCFM001456 | Golgi membrane trans-Golgi network inositol pentakisphosphate 2-kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc inositol pyrophosphates biosynthesis lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3) lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3) homogalacturonan biosynthesis 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) polygalacturonate 4-alpha-galacturonosyltransferase activity zinc ion transmembrane transporter activity cytoplasmic, membrane-bounded vesicle transition metal ion binding Amino sugar and nucleotide sugar metabolism Inositol phosphate metabolism metal ion transport cellular transition metal ion homeostasis zinc II ion transmembrane transport pectin biosynthetic process integral component of membrane | details |
| TissueCFM001621 | cytoplasmic, membrane-bounded vesicle Protein_kinases_phosphatases, PPC:4.2.5: Unknown Function Kinase Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase integral component of membrane Transcription_related, Transcription regulator: SET protein phosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |