TissueCFM001593's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| poly(A) RNA binding | 0.00016142 | GO:0044822 |
| RNA processing | 0.000309084 | GO:0006396 |
| ATP-dependent RNA helicase activity | 0.000540292 | GO:0004004 |
| Thyroid hormone signaling pathway | 0.009097083 | KEGG pathway |
| RNA polymerase II transcription cofactor activity | 0.016197855 | GO:0001104 |
| mediator complex | 0.023318485 | GO:0016592 |
| cytoplasm | 0.023318485 | GO:0005737 |
| viral nucleocapsid | 0.023318485 | GO:0019013 |
| intracellular ribonucleoprotein complex | 0.023318485 | GO:0030529 |
| regulation of transcription from RNA polymerase II promoter | 0.027194649 | GO:0006357 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.041052335 | ubs family |
| RNA degradation | 0.041828598 | KEGG pathway |
| nucleus | 0.042642588 | GO:0005634 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006417 | AT2G35340 (3.00E-152) | MEE29|maternal effect embryo arrest 29 |
| CRO_T011627 | AT1G55325 (2.00E-99) | GCT|GRAND CENTRAL; MAB2|MACCHI-BOU 2 |
| CRO_T020935 | AT2G19950 (1.00E-158) | GC1|golgin candidate 1 |
| CRO_T022238 | AT3G16830 (0) | TPR2|TOPLESS-related 2 |
| CRO_T025292 | AT5G66010 (3.00E-10) | RNA-binding (RRM/RBD/RNP motifs) family protein |
| CRO_T028408 | AT1G71440 (6.00E-167) | PFI|PFIFFERLING; TFC E|TUBULIN-FOLDING COFACTOR E |
| CRO_T032944 | AT1G06670 (1.00E-38) | NIH|nuclear DEIH-boxhelicase |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM001425 | regulation of proton transport intracellular ribonucleoprotein complex viral nucleocapsid Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TissueCFM001594 | nucleomorph Thyroid hormone signaling pathway DNA-directed RNA polymerase II, core complex response to zinc ion regulation of sequestering of zinc ion RNA polymerase II transcription cofactor activity zinc ion transmembrane transporter activity RNA polymerase II activity serine-type carboxypeptidase activity mediator complex zinc II ion transmembrane transport transcription from RNA polymerase II promoter regulation of transcription from RNA polymerase II promoter proteolysis involved in cellular protein catabolic process Ubiquitin_Proteasome_system, E3 adaptor: DWD Purine metabolism | details |
Expression profiles
 Show details about module gene expression profiling |