TissueCFM001676's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Fanconi anemia pathway | 0.004602101 | KEGG pathway |
| Transcription_related, Transcription regulator: SNF2 | 0.008130157 | TF family |
| nucleic acid metabolic process | 0.010094442 | GO:0090304 |
| intracellular | 0.038901794 | GO:0005622 |
| organic cyclic compound binding | 0.047800635 | GO:0097159 |
| heterocyclic compound binding | 0.047800635 | GO:1901363 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T022921 | AT1G48360 (1.00E-06) | zinc ion binding; nucleic acid binding; hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides |
| CRO_T023306 | AT5G16420 (1.00E-22) | Pentatricopeptide repeat (PPR-like) superfamily protein |
| CRO_T026922 | AT3G57300 (0) | ATINO80|INO80 ORTHOLOG |
| CRO_T032792 | AT2G20210 (2.00E-43) | RNI-like superfamily protein |
| CRO_T032824 | - | - |
| CRO_T033372 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000790 | formation of glycosidic bonds, GlycosylTransferases: GTnc Calcium signaling pathway voltage-gated anion channel activity threonine-type endopeptidase activity mitochondrial outer membrane proteasome core complex Proteasome regulation of anion transmembrane transport anion transport | details |
| TissueCFM001026 | Ras signaling pathway transport intracellular formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TissueCFM001375 | lipid transporter activity SUMO activating enzyme activity glycolipid translocation regulation of mitotic cell cycle response to oxygen-containing compound response to acid chemical protein sumoylation Ras signaling pathway Ubiquitin mediated proteolysis | details |
| TissueCFM001573 | Fanconi anemia pathway queuine tRNA-ribosyltransferase activity RNA polymerase II core binding negative regulation of flower development histone methylation queuosine biosynthetic process regulation of histone H3-K4 methylation Cdc73/Paf1 complex nucleic acid metabolic process positive regulation of transcription, DNA-templated Transcription_related, Transcription regulator: SNF2 | details |
| TissueCFM001677 | RNA degradation seleno-amino acid biosynthesis histone H3-K36 methylation translational frameshifting positive regulation of translational termination positive regulation of translational elongation 'de novo' L-methionine biosynthetic process histone H3-K4 methylation negative regulation of flower development L-cysteine desulfhydrase activity cystathionine beta-lyase activity L-cystine L-cysteine-lyase (deaminating) cystathionine gamma-lyase activity proteasome core complex, alpha-subunit complex Cul4-RING E3 ubiquitin ligase complex Transcription_related, Transcription regulator: DDT Proteasome Biosynthesis of amino acids Transcription_related, Transcription regulator: PHD Transcription_related, Transcription regulator: SNF2 threonine-type endopeptidase activity ribosome binding poly(A) RNA binding | details |
Expression profiles
 Show details about module gene expression profiling |