TissueCFM001699's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| nucleomorph | 0.004048762 | GO:0033009 |
| response to zinc ion | 0.007815683 | GO:0010043 |
| protein depalmitoylation | 0.007815683 | GO:0002084 |
| regulation of sequestering of zinc ion | 0.007815683 | GO:0061088 |
| lysophospholipase activity | 0.008683451 | GO:0004622 |
| palmitoyl-(protein) hydrolase activity | 0.008683451 | GO:0008474 |
| RNA polymerase II activity | 0.008683451 | GO:0001055 |
| benzoate biosynthesis I (CoA-dependent, β-oxidative) | 0.011120806 | plantCyc |
| zinc II ion transmembrane transport | 0.012491241 | GO:0071577 |
| transcription from RNA polymerase II promoter | 0.012491241 | GO:0006366 |
| DNA-directed RNA polymerase II, core complex | 0.014158109 | GO:0005665 |
| zinc ion transmembrane transporter activity | 0.014964571 | GO:0005385 |
| cell | 0.024902886 | GO:0005623 |
| Glycerophospholipid metabolism | 0.029670821 | KEGG pathway |
| cell redox homeostasis | 0.032836612 | GO:0045454 |
| Ubiquitin_Proteasome_system, E3 adaptor: DWD | 0.035293061 | ubs family |
| Purine metabolism | 0.039983053 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T011819 | AT5G20060 (1.00E-104) | alpha/beta-Hydrolases superfamily protein |
| CRO_T022679 | AT5G66410 (2.00E-32) | PLP3b|phosducin-like protein 3 homolog |
| CRO_T028018 | AT3G58810 (1.00E-11) | ATMTP3|ARABIDOPSIS METAL TOLERANCE PROTEIN 3; MTP3|METAL TOLERANCE PROTEIN 3; MTPA2|metal tolerance protein A2 |
| CRO_T029114 | AT1G03060 (0) | SPI|SPIRRIG |
| CRO_T030629 | AT4G35800 (0) | NRPB1|RNA polymerase II large subunit |
| CRO_T033550 | AT4G01990 (7.00E-119) | Tetratricopeptide repeat (TPR)-like superfamily protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000728 | Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family Protein processing in endoplasmic reticulum nucleomorph DNA-directed RNA polymerase II, core complex COPII vesicle coat RNA polymerase II activity protein disulfide isomerase activity Protein export regulation of cell shape response to endoplasmic reticulum stress transcription from RNA polymerase II promoter Endocytosis Wnt signaling pathway ER to Golgi vesicle-mediated transport peptidyl-serine phosphorylation Purine metabolism cell redox homeostasis | details |
| TissueCFM001594 | nucleomorph Thyroid hormone signaling pathway DNA-directed RNA polymerase II, core complex response to zinc ion regulation of sequestering of zinc ion RNA polymerase II transcription cofactor activity zinc ion transmembrane transporter activity RNA polymerase II activity serine-type carboxypeptidase activity mediator complex zinc II ion transmembrane transport transcription from RNA polymerase II promoter regulation of transcription from RNA polymerase II promoter proteolysis involved in cellular protein catabolic process Ubiquitin_Proteasome_system, E3 adaptor: DWD Purine metabolism | details |
| TissueCFM001659 | signal transduction MAPK signaling pathway - fly protein import into nucleus vesicle docking regulation of protein phosphatase type 2A activity protein phosphatase type 2A regulator activity Ran GTPase binding exocytosis mRNA surveillance pathway nuclear envelope protein phosphatase type 2A complex exocyst cytosol protein transporter activity cell cell redox homeostasis | details |
| TissueCFM001660 | protein transporter activity rosmarinic acid biosynthesis I rosmarinic acid biosynthesis II hydroxyphenylpyruvate reductase activity 4-hydroxybenzoate biosynthesis I (eukaryotes) signal transduction oxidative photosynthetic carbon pathway glyoxylate reductase (NADP) activity hydroxypyruvate reductase activity protein phosphatase type 2A regulator activity protein import into nucleus, docking protein import into nucleus, translocation ribosomal protein import into nucleus regulation of protein phosphatase type 2A activity nuclear localization sequence binding Ran GTPase binding MAPK signaling pathway - fly NLS-bearing protein import into nucleus nuclear periphery protein phosphatase type 2A complex clathrin adaptor complex nuclear membrane nuclear envelope protein import into nucleus | details |
| TissueCFM001698 | lysophospholipase activity palmitoyl-(protein) hydrolase activity long-day photoperiodism protein depalmitoylation nuclear-transcribed mRNA catabolic process, nonsense-mediated decay benzoate biosynthesis I (CoA-dependent, β-oxidative) sugar mediated signaling pathway response to wounding jasmonic acid mediated signaling pathway salicylic acid mediated signaling pathway Glycerophospholipid metabolism defense response to bacterium zinc ion binding helicase activity Ubiquitin_Proteasome_system, E3 adaptor: DWD cell redox homeostasis vesicle-mediated transport RNA transport | details |
| TissueCFM001839 | cell vesicle-mediated transport cell redox homeostasis Transcription_related, Transcription factor: bHLH calcium ion binding protein dimerization activity | details |
Expression profiles
 Show details about module gene expression profiling |