TissueCFM001742's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| SNARE interactions in vesicular transport | 0.006720188 | KEGG pathway |
| Golgi vesicle transport | 0.007386615 | GO:0048193 |
| SNAP receptor activity | 0.010344788 | GO:0005484 |
| SNARE binding | 0.010344788 | GO:0000149 |
| vesicle docking | 0.015493564 | GO:0048278 |
| vesicle fusion | 0.015726707 | GO:0006906 |
| intracellular protein transport | 0.042492509 | GO:0006886 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T008902 | AT3G49410 (4.00E-68) | Transcription factor IIIC, subunit 5 |
| CRO_T021052 | AT4G24900 (7.00E-31) | TTL|TITAN-like |
| CRO_T023017 | AT3G25030 (3.00E-05) | RING/U-box superfamily protein |
| CRO_T023502 | AT3G44370 (4.00E-119) | Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain |
| CRO_T023555 | AT1G72480 (0) | Lung seven transmembrane receptor family protein |
| CRO_T032194 | AT1G28490 (9.00E-24) | SYP61|syntaxin of plants 61 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000632 | pre-mRNA cleavage required for polyadenylation positive regulation of phosphorylation of RNA polymerase II C-terminal domain positive regulation of cyclin-dependent protein serine/threonine kinase activity Transcriptional misregulation in cancers positive regulation of transcription from RNA polymerase II promoter nucleotide binding cyclin-dependent protein serine/threonine kinase regulator activity cyclin-dependent protein kinase holoenzyme complex mRNA cleavage and polyadenylation specificity factor complex mRNA binding Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) mRNA surveillance pathway | details |
| TissueCFM000696 | pre-mRNA cleavage required for polyadenylation L-valine degradation I Valine, leucine and isoleucine degradation mRNA cleavage and polyadenylation specificity factor complex single-organism metabolic process mRNA surveillance pathway mRNA binding | details |
| TissueCFM000925 | catalytic step 1 spliceosome prespliceosome Prp19 complex cyclin-dependent protein kinase holoenzyme complex post-mRNA release spliceosomal complex Golgi vesicle transport positive regulation of cyclin-dependent protein serine/threonine kinase activity positive regulation of phosphorylation of RNA polymerase II C-terminal domain positive regulation of transcription from RNA polymerase II promoter cytoplasmic microtubule organization spliceosomal complex assembly vesicle docking precatalytic spliceosome cyclin-dependent protein serine/threonine kinase regulator activity oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor | details |
| TissueCFM001022 | pre-mRNA cleavage required for polyadenylation positive regulation of phosphorylation of RNA polymerase II C-terminal domain positive regulation of cyclin-dependent protein serine/threonine kinase activity Transcriptional misregulation in cancers positive regulation of transcription from RNA polymerase II promoter cyclin-dependent protein kinase holoenzyme complex mRNA cleavage and polyadenylation specificity factor complex cyclin-dependent protein serine/threonine kinase regulator activity serine-type carboxypeptidase activity mRNA binding mRNA surveillance pathway proteolysis involved in cellular protein catabolic process | details |
| TissueCFM001621 | cytoplasmic, membrane-bounded vesicle Protein_kinases_phosphatases, PPC:4.2.5: Unknown Function Kinase Protein_kinases_phosphatases, PPC:1.11.1: Legume Lectin Domain Kinase integral component of membrane Transcription_related, Transcription regulator: SET protein phosphorylation | details |
| TissueCFM001631 | nucleosome regulation of endosperm development THO complex MCM complex chromatin silencing DNA replication initiation DNA duplex unwinding nucleosome assembly nuclear chromatin DNA replication origin binding Basal transcription factors DNA replication Necroptosis DNA helicase activity Aminoacyl-tRNA biosynthesis | details |
| TissueCFM001785 | SNARE interactions in vesicular transport Golgi vesicle transport SNAP receptor activity SNARE binding vesicle docking vesicle fusion SNARE complex trans-Golgi network intracellular protein transport | details |
Expression profiles
 Show details about module gene expression profiling |