TissueCFM001754's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family | 0.002067152 | kinase family |
| chiasma | 0.002503029 | GO:0005712 |
| MutLalpha complex | 0.002503029 | GO:0032389 |
| cytoplasm | 0.002503029 | GO:0005737 |
| synaptonemal complex | 0.006567539 | GO:0000795 |
| nuclear chromatin | 0.011247663 | GO:0000790 |
| proteasome complex | 0.011247663 | GO:0000502 |
| Mismatch repair | 0.014776208 | KEGG pathway |
| regulation of signal transduction | 0.023177694 | GO:0009966 |
| seed germination | 0.023177694 | GO:0009845 |
| mitotic recombination | 0.023177694 | GO:0006312 |
| seed development | 0.023177694 | GO:0048316 |
| regulation of cell shape | 0.023177694 | GO:0008360 |
| Wnt signaling pathway | 0.023177694 | KEGG pathway |
| Endocytosis | 0.025606099 | KEGG pathway |
| Proteasome | 0.026066159 | KEGG pathway |
| ATP binding | 0.026243066 | GO:0005524 |
| mismatched DNA binding | 0.026243066 | GO:0030983 |
| single-stranded DNA binding | 0.032925203 | GO:0003697 |
| protein catabolic process | 0.034942306 | GO:0030163 |
| pollen development | 0.034942306 | GO:0009555 |
| peptidyl-serine phosphorylation | 0.041019371 | GO:0018105 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004405 | AT3G21290 (9.00E-09) | dentin sialophosphoprotein-related |
| CRO_T007852 | AT5G43010 (7.00E-42) | RPT4A|regulatory particle triple-A ATPase 4A |
| CRO_T021923 | AT1G24706 (2.00E-89) | EMB2793|EMBRYO DEFECTIVE 2793 |
| CRO_T024318 | AT4G09140 (0) | ATMLH1|MUTL-HOMOLOGUE 1 |
| CRO_T026625 | AT5G43320 (2.00E-41) | ckl8|casein kinase I-like 8 |
| CRO_T029893 | - | - |
| CRO_T031043 | AT5G53440 (2.00E-76) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000728 | Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family Protein processing in endoplasmic reticulum nucleomorph DNA-directed RNA polymerase II, core complex COPII vesicle coat RNA polymerase II activity protein disulfide isomerase activity Protein export regulation of cell shape response to endoplasmic reticulum stress transcription from RNA polymerase II promoter Endocytosis Wnt signaling pathway ER to Golgi vesicle-mediated transport peptidyl-serine phosphorylation Purine metabolism cell redox homeostasis | details |
| TissueCFM000829 | Proteasome nucleus ubiquitin-dependent protein catabolic process cytoplasm UBC13-MMS2 complex Golgi medial cisterna cis-Golgi network Protein_kinases_phosphatases, PPC:3.1.1: Casein Kinase I Family proteasome core complex, alpha-subunit complex postreplication repair response to iron ion protein K63-linked ubiquitination root epidermal cell differentiation regulation of vesicle targeting, to, from or within Golgi peptidyl-lysine methylation response to cadmium ion Wnt signaling pathway proteasome complex SNARE interactions in vesicular transport Ubiquitin_Proteasome_system, E2: UBC regulation of cell shape intra-Golgi vesicle-mediated transport Endocytosis Transcription_related, Transcription factor: C2H2 vesicle fusion ER to Golgi vesicle-mediated transport protein catabolic process Ubiquitin mediated proteolysis SNARE complex protein-lysine N-methyltransferase activity ATP binding threonine-type endopeptidase activity ubiquitin protein ligase binding SNARE binding SNAP receptor activity peptidyl-serine phosphorylation protein transport | details |
| TissueCFM001021 | MutLalpha complex chiasma Transcription_related, Transcription factor: Whirly synaptonemal complex nuclear body anaphase-promoting complex L-valine degradation I nuclear chromatin anaphase-promoting complex-dependent catabolic process regulation of mitotic metaphase/anaphase transition negative regulation of DNA endoreduplication protein K11-linked ubiquitination cell proliferation mitotic recombination Mismatch repair phloem or xylem histogenesis seed development mitotic nuclear division seed germination mismatched DNA binding cell division pollen development Transcription_related, Transcription factor: C3H single-stranded DNA binding | details |
| TissueCFM001466 | Ubiquitin_Proteasome_system, DUB: JAMM Spliceosome poly-pyrimidine tract binding pre-mRNA 3'-splice site binding rRNA primary transcript binding U2-type prespliceosome U2AF Mpp10 complex commitment complex nuclear speck nuclear matrix proteasome complex snoRNA binding Basal transcription factors Proteasome viral nucleocapsid membrane part cellular metabolic process mRNA processing regulation of signal transduction rRNA processing thylakoid proteasome-mediated ubiquitin-dependent protein catabolic process Ribosome biogenesis in eukaryotes small-subunit processome heterocyclic compound binding organic cyclic compound binding | details |
| TissueCFM001532 | Toll and Imd signaling pathway Ubiquitin_Proteasome_system, E2: UBC postreplication repair ribosomal small subunit biogenesis protein K63-linked ubiquitination Proteasome protein catabolic process protein transport cytoplasm proteasome complex | details |
| TissueCFM001738 | Ubiquitin_Proteasome_system, E3: UBR-box Spliceosome macromolecule modification regulation of RNA splicing regulation of cell differentiation regulation of signal transduction aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation mRNA processing RNA secondary structure unwinding | details |
Expression profiles
 Show details about module gene expression profiling |