TissueCFM001806's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| spermine and spermidine degradation III | 0.002303262 | plantCyc |
| Transcription_related, Transcription regulator: SWI/SNF-SWI3 | 0.004875166 | TF family |
| histone H3-K4 methylation | 0.007386615 | GO:0051568 |
| Transcription_related, Transcription factor: WRKY | 0.023810781 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000224 | AT3G23330 (1.00E-131) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T007277 | AT4G30935 (2.00E-67) | WRKY32|WRKY DNA-binding protein 32 |
| CRO_T009684 | AT1G62830 (0) | ATLSD1|ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE; LDL1|LSD1-like 1; LSD1|LYSINE-SPECIFIC HISTONE DEMETHYLASE |
| CRO_T020729 | AT3G07870 (2.00E-27) | F-box and associated interaction domains-containing protein |
| CRO_T025219 | AT2G24220 (2.00E-93) | ATPUP5|purine permease 5 |
| CRO_T028487 | AT2G43945 (4.00E-77) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TissueCFM000559 | negative regulation of reductive pentose-phosphate cycle protein targeting to ER Protein_kinases_phosphatases, PPC:2.1.3: CTR1/EDR1 Kinase Protein export Transcription_related, Transcription factor: WRKY signal recognition particle, endoplasmic reticulum targeting protein complex peptidyl-tyrosine phosphorylation signal recognition particle binding | details |
| TissueCFM001170 | spermine and spermidine degradation III Transcription_related, Transcription regulator: SWI/SNF-SWI3 formation of glycosidic bonds, GlycosylTransferases: GTnc U2AF histone H3-K4 methylation Spliceosome mRNA splicing, via spliceosome | details |
| TissueCFM001284 | nuclear ubiquitin ligase complex vegetative phase change deadenylation-dependent decapping of nuclear-transcribed mRNA developmental process involved in reproduction deadenylation-independent decapping of nuclear-transcribed mRNA detection of nutrient organ senescence sugar mediated signaling pathway primary root development enzyme regulator activity Apelin signaling pathway RNA degradation cytoplasmic mRNA processing body Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) mRNA binding abscisic acid-activated signaling pathway | details |
| TissueCFM001315 | Protein_kinases_phosphatases, PPC:4.2.5: Unknown Function Kinase Hedgehog signaling pathway - fly DNA methylation on cytosine glycerol metabolic process Transcription_related, Transcription factor: WRKY endoplasmic reticulum lumen developmental process glycerone kinase activity | details |
| TissueCFM001397 | Transcription_related, Transcription regulator: SWI/SNF-SWI3 formation of glycosidic bonds, GlycosylTransferases: GTnc spermine and spermidine degradation III plant sterol biosynthesis Ubiquitin_Proteasome_system, DUB: USP steroid biosynthetic process histone H3-K4 methylation protein deubiquitination Steroid biosynthesis 3-beta-hydroxy-delta5-steroid dehydrogenase activity thiol-dependent ubiquitinyl hydrolase activity Spliceosome Golgi membrane integral component of membrane oxidation-reduction process cell wall organization | details |
| TissueCFM001620 | Transcription_related, Transcription regulator: SWI/SNF-SWI3 spermine and spermidine degradation III leucyl-tRNA aminoacylation histone H3-K4 methylation regulation of translational fidelity leucine-tRNA ligase activity oxidoreductase activity aminoacyl-tRNA editing activity Aminoacyl-tRNA biosynthesis oxidation-reduction process Spliceosome | details |
| TissueCFM001824 | Transcription_related, Transcription regulator: SWI/SNF-SWI3 cytoplasmic ubiquitin ligase complex uracil phosphoribosyltransferase activity beta-ketoacyl-acyl-carrier-protein synthase III activity Atg8 ligase activity 3-oxoacyl-[acyl-carrier-protein] synthase activity histone H3-K4 methylation nucleophagy pyrimidine nucleoside salvage UMP biosynthetic process uracil salvage mitophagy pyrimidine nucleobases salvage I superpathway of pyrimidine nucleobases salvage superpathway of pyrimidine ribonucleosides salvage autophagosome assembly fatty acid biosynthesis initiation I spermine and spermidine degradation III pyrimidine salvage pathway uridine kinase activity potassium ion binding pyruvate kinase activity chloroplast cytosol Rubisco shunt glycolysis IV (plant cytosol) Autophagy - animal Pyrimidine metabolism glycolysis I (from glucose 6-phosphate) glycolytic process Fatty acid metabolism protein transport fatty acid biosynthetic process | details |
Expression profiles
 Show details about module gene expression profiling |