TreatCFM000159's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| purine nucleoside catabolic process | 0.004560901 | GO:0006152 |
| diacylglycerol biosynthetic process | 0.004560901 | GO:0006651 |
| purine nucleosidase activity | 0.005171089 | GO:0008477 |
| phosphatidate phosphatase activity | 0.005614583 | GO:0008195 |
| structural constituent of ribosome | 0.005614583 | GO:0003735 |
| Transcription_related, Transcription regulator: PHD | 0.006601998 | TF family |
| Pyrimidine metabolism | 0.007219016 | KEGG pathway |
| translation | 0.008405248 | GO:0006412 |
| adenine and adenosine salvage II | 0.012148391 | plantCyc |
| guanosine nucleotides degradation I | 0.012148391 | plantCyc |
| pyrimidine ribonucleosides salvage II | 0.012148391 | plantCyc |
| pyrimidine salvage pathway | 0.012148391 | plantCyc |
| adenosine nucleotides degradation I | 0.016989664 | plantCyc |
| ribosome biogenesis | 0.023506229 | GO:0042254 |
| diacylglycerol and triacylglycerol biosynthesis | 0.02422796 | plantCyc |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002876 | AT1G07025 (3.00E-33) | Mitochondrial substrate carrier family protein |
| CRO_T003227 | AT3G14740 (4.00E-09) | RING/FYVE/PHD zinc finger superfamily protein |
| CRO_T022403 | AT3G50920 (1.00E-56) | LPPepsilon1|lipid phosphate phosphatase epsilon 1 |
| CRO_T024549 | AT2G36310 (2.00E-86) | NSH1|nucleoside hydrolase 1; URH1|uridine-ribohydrolase 1 |
| CRO_T025647 | AT2G20390 (2.00E-46) | unknown protein |
| CRO_T031066 | AT1G18720 (2.00E-66) | Protein of unknown function (DUF962) |
| CRO_T032837 | AT3G20260 (6.00E-22) | Protein of unknown function (DUF1666) |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000629 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 alpha-glucan, water dikinase activity phosphatidylinositol phosphate binding ATPase activator activity 6-phosphofructokinase complex fructose 6-phosphate metabolic process starch catabolic process positive regulation of ATPase activity phosphatidylinositol-mediated signaling cold acclimation glycolytic process through fructose-6-phosphate peptidyl-histidine phosphorylation 6-phosphofructokinase activity metallopeptidase activity protein histidine kinase activity Transcription_related, Transcription regulator: PHD phosphatidylinositol phosphorylation chaperone binding 3-phosphoinositide biosynthesis D-myo-inositol (1,4,5)-trisphosphate biosynthesis glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM001626 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 alpha-glucan, water dikinase activity cytoskeleton organization starch catabolic process cold acclimation protein histidine kinase activity peptidyl-histidine phosphorylation cell wall organization or biogenesis O-acetyltransferase activity Protein processing in endoplasmic reticulum | details |
| TreatCFM001799 | 6-phosphofructokinase complex fructose 6-phosphate metabolic process glycolytic process through fructose-6-phosphate regulation of membrane potential Transcription_related, Transcription regulator: PHD Transcription_related, Transcription regulator: SNF2 glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) potassium ion transmembrane transport 6-phosphofructokinase activity voltage-gated potassium channel activity chloroplast | details |
| TreatCFM001921 | chloroplast 6-phosphofructokinase complex glycogen biosynthetic process fructose 6-phosphate metabolic process nuclear-transcribed mRNA catabolic process, nonsense-mediated decay glycolytic process through fructose-6-phosphate glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: PHD Transcription_related, Transcription regulator: SNF2 post-embryonic development 1,4-alpha-glucan branching enzyme activity 6-phosphofructokinase activity cation binding DNA repair | details |
Expression profiles
 Show details about module gene expression profiling |