TreatCFM000203's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: NF-YC | 0.002480253 | TF family |
| nucleus | 0.013622478 | GO:0005634 |
| regulation of transcription from RNA polymerase II promoter | 0.025447167 | GO:0006357 |
| RNA polymerase II regulatory region sequence-specific DNA binding | 0.044262698 | GO:0000977 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005274 | - | - |
| CRO_T006973 | AT2G31290 (4.00E-17) | Ubiquitin carboxyl-terminal hydrolase family protein |
| CRO_T009496 | AT3G48590 (2.00E-63) | NF-YC1|nuclear factor Y, subunit C1 |
| CRO_T028239 | - | - |
| CRO_T030780 | - | - |
| CRO_T031436 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000017 | Oxidative phosphorylation mitochondrion NADH dehydrogenase (ubiquinone) activity mitochondrial inner membrane heme transporter activity heme transport cytochrome-c oxidase activity respiratory chain cytochrome complex assembly hydrogen ion transmembrane transport ATP synthesis coupled electron transport heme binding aerobic respiration hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances aerobic electron transport chain electron transport chain generation of precursor metabolites and energy ATP synthesis coupled proton transport mitochondrial electron transport, NADH to ubiquinone hydrogen ion transmembrane transporter activity quinone binding photosynthetic electron transport in photosystem II succinate dehydrogenase activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity succinate dehydrogenase complex | details |
| TreatCFM000168 | RNA transport | details |
| TreatCFM000255 | HTLV-I infection Transcription_related, Transcription factor: NF-YC Ubiquitin_Proteasome_system, E3 adaptor: BTB | details |
| TreatCFM000419 | vacuolar proton-transporting V-type ATPase complex assembly Transcription_related, Transcription factor: NF-YC endoplasmic reticulum-Golgi intermediate compartment membrane protein heterodimerization activity COPII vesicle coat | details |
| TreatCFM000438 | Transcription_related, Transcription factor: NF-YC S-methyl-5-thio-α-D-ribose 1-phosphate degradation biosynthetic process L-aspartate:2-oxoglutarate aminotransferase activity L-phenylalanine:2-oxoglutarate aminotransferase activity | details |
| TreatCFM000557 | Transcription_related, Transcription factor: NF-YC ribosomal protein import into nucleus protein import into nucleus, docking protein import into nucleus, translocation NLS-bearing protein import into nucleus nuclear periphery COPII vesicle coat nuclear membrane ER to Golgi vesicle-mediated transport | details |
| TreatCFM000648 | Transcription_related, Transcription factor: NF-YC Lysine degradation protein heterodimerization activity | details |
| TreatCFM000679 | Transcription_related, Transcription factor: NF-YC DNA metabolic process protein heterodimerization activity | details |
| TreatCFM000844 | Transcription_related, Transcription factor: NF-YC protein heterodimerization activity | details |
| TreatCFM000947 | regulation of transcription from RNA polymerase II promoter RNA polymerase II regulatory region sequence-specific DNA binding | details |
| TreatCFM001144 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K Transcription_related, Transcription factor: NF-YC activation of MAPK activity defense response, incompatible interaction nucleobase-containing compound metabolic process macromolecule metabolic process MAP kinase kinase activity MAPK cascade MAPK signaling pathway - plant MAP kinase activity | details |
| TreatCFM001243 | Transcription_related, Transcription factor: NF-YC beta-galactosidase complex Galactose metabolism beta-galactosidase activity carbohydrate binding protein heterodimerization activity carbohydrate metabolic process | details |
| TreatCFM001252 | nuclear export signal receptor activity protein export from nucleus Ran GTPase binding COPII vesicle coat SCF ubiquitin ligase complex nuclear pore ER to Golgi vesicle-mediated transport Ubiquitin_Proteasome_system, E3 adaptor: F-box intracellular protein transport | details |
| TreatCFM001405 | Transcription_related, Transcription factor: NF-YC protein heterodimerization activity | details |
| TreatCFM001507 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds nitrogen compound metabolic process RNA polymerase II regulatory region sequence-specific DNA binding regulation of transcription from RNA polymerase II promoter transferase activity, transferring acyl groups | details |
| TreatCFM001652 | Transcription_related, Transcription factor: NF-YC protein import into nucleus, docking ribosomal protein import into nucleus protein import into nucleus, translocation NLS-bearing protein import into nucleus nuclear periphery nuclear membrane nuclear localization sequence binding Ran GTPase binding protein transporter activity protein heterodimerization activity RNA transport | details |
| TreatCFM001999 | Transcription_related, Transcription factor: NF-YC COPII vesicle coat ER to Golgi vesicle-mediated transport intracellular protein transport protein heterodimerization activity Protein processing in endoplasmic reticulum | details |
Expression profiles
 Show details about module gene expression profiling |