TreatCFM000225's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Oxidative phosphorylation | 5.15E-22 | KEGG pathway |
| mitochondrial proton-transporting ATP synthase complex | 6.52E-08 | GO:0005753 |
| mitochondrial inner membrane | 7.54E-08 | GO:0005743 |
| proton-transporting ATP synthase activity, rotational mechanism | 3.24E-06 | GO:0046933 |
| ATP synthesis coupled proton transport | 7.13E-06 | GO:0015986 |
| mitochondrial ATP synthesis coupled proton transport | 1.50E-05 | GO:0042776 |
| cellular respiration | 1.87E-05 | GO:0045333 |
| proton-transporting ATP synthase complex, coupling factor F(o) | 2.15E-05 | GO:0045263 |
| hydrogen ion transmembrane transporter activity | 0.000241004 | GO:0015078 |
| respiratory chain | 0.000492425 | GO:0070469 |
| NADH dehydrogenase (ubiquinone) activity | 0.001886323 | GO:0008137 |
| NADH dehydrogenase (quinone) activity | 0.017295091 | GO:0050136 |
| aerobic respiration I (cytochrome c) | 0.023702504 | plantCyc |
| aerobic respiration III (alternative oxidase pathway) | 0.023702504 | plantCyc |
| NAD/NADH phosphorylation and dephosphorylation | 0.023702504 | plantCyc |
| aerobic respiration | 0.025016965 | GO:0009060 |
| oxidation-reduction process | 0.025016965 | GO:0055114 |
| proton-transporting ATP synthase complex, catalytic core F(1) | 0.031648704 | GO:0045261 |
| integral component of membrane | 0.031648704 | GO:0016021 |
| ATP hydrolysis coupled proton transport | 0.035320055 | GO:0015991 |
| cytochrome-c oxidase activity | 0.035950098 | GO:0004129 |
| endonuclease activity | 0.035950098 | GO:0004519 |
| mitochondrion | 0.039996076 | GO:0005739 |
| proton-transporting ATPase activity, rotational mechanism | 0.040631743 | GO:0046961 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T010548 | ATMG01360 (6.00E-12) | COX1|cytochrome oxidase |
| CRO_T011545 | AT2G07741 (3.00E-11) | ATPase, F0 complex, subunit A protein |
| CRO_T013265 | ATMG00070 (1.00E-24) | NAD9|NADH dehydrogenase subunit 9 |
| CRO_T014733 | ATMG00070 (3.00E-82) | NAD9|NADH dehydrogenase subunit 9 |
| CRO_T015323 | AT2G07689 (8.00E-53) | NADH-Ubiquinone/plastoquinone (complex I) protein |
| CRO_T017844 | - | - |
| CRO_T019992 | - | - |
| CRO_T021838 | ATMG01190 (1.00E-21) | ATP1|ATP synthase subunit 1 |
| CRO_T023419 | - | - |
| CRO_T031523 | ATMG01360 (8.00E-61) | COX1|cytochrome oxidase |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000017 | Oxidative phosphorylation mitochondrion NADH dehydrogenase (ubiquinone) activity mitochondrial inner membrane heme transporter activity heme transport cytochrome-c oxidase activity respiratory chain cytochrome complex assembly hydrogen ion transmembrane transport ATP synthesis coupled electron transport heme binding aerobic respiration hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances aerobic electron transport chain electron transport chain generation of precursor metabolites and energy ATP synthesis coupled proton transport mitochondrial electron transport, NADH to ubiquinone hydrogen ion transmembrane transporter activity quinone binding photosynthetic electron transport in photosystem II succinate dehydrogenase activity electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity succinate dehydrogenase complex | details |
| TreatCFM000617 | Oxidative phosphorylation endonuclease activity ATP synthesis coupled proton transport nucleic acid phosphodiester bond hydrolysis mitochondrial inner membrane mitochondrion proton-transporting ATP synthase complex, coupling factor F(o) aerobic respiration NADH dehydrogenase (quinone) activity proton-transporting ATP synthase complex, catalytic core F(1) ATP hydrolysis coupled proton transport cytochrome-c oxidase activity proton-transporting ATPase activity, rotational mechanism hydrogen ion transmembrane transporter activity proton-transporting ATP synthase activity, rotational mechanism single-organism metabolic process respiratory chain hydrogen ion transmembrane transport | details |
Expression profiles
 Show details about module gene expression profiling |