TreatCFM000250's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Endocytosis | 0.017603897 | KEGG pathway |
| clathrin adaptor complex | 0.01919385 | GO:0030131 |
| protein targeting | 0.025962193 | GO:0006605 |
| sulfate assimilation | 0.033698522 | GO:0000103 |
| cellular response to oxidative stress | 0.033698522 | GO:0034599 |
| glycerol ether metabolic process | 0.033698522 | GO:0006662 |
| protein disulfide oxidoreductase activity | 0.034290115 | GO:0015035 |
| protein transporter activity | 0.034290115 | GO:0008565 |
| oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 0.034290115 | GO:0016671 |
| Ubiquitin_Proteasome_system, E3 adaptor: F-box | 0.036841041 | ubs family |
| rRNA processing | 0.042464895 | GO:0006364 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002810 | AT1G07700 (2.00E-39) | Thioredoxin superfamily protein |
| CRO_T009976 | AT1G12244 (4.00E-64) | Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
| CRO_T022803 | AT3G12685 (1.00E-15) | Acid phosphatase/vanadium-dependent haloperoxidase-related protein |
| CRO_T029370 | - | - |
| CRO_T030427 | AT4G14870 (7.00E-23) | SECE1|secE/sec61-gamma protein transport protein |
| CRO_T033186 | AT1G23900 (1.00E-24) | GAMMA-ADAPTIN 1|gamma-adaptin 1; Gamma-ADR|Gamma-adaptin |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000729 | Hedgehog signaling pathway Base excision repair Ubiquitin_Proteasome_system, SOCS/VHL/BC-box: 3-box DNA-3-methyladenine glycosylase activity glycerol ether metabolic process cellular response to oxidative stress base-excision repair sulfate assimilation rRNA processing oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor protein disulfide oxidoreductase activity | details |
| TreatCFM001241 | proteasome regulatory particle, lid subcomplex cuticle development proteasome assembly plastid organization shikimate metabolic process aromatic amino acid family biosynthetic process Transcription_related, Transcription factor: C2C2-Dof DNA-3-methyladenine glycosylase activity shikimate kinase activity base-excision repair structural molecule activity rRNA processing Base excision repair Proteasome ubiquitin-dependent protein catabolic process | details |
Expression profiles
 Show details about module gene expression profiling |