TreatCFM000304's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| primary root development | 0.018182588 | GO:0080022 |
| arginine biosynthetic process | 0.018182588 | GO:0006526 |
| interspecies interaction between organisms | 0.018182588 | GO:0044419 |
| chloroplast stroma | 0.024397686 | GO:0009570 |
| 2-Oxocarboxylic acid metabolism | 0.033350638 | KEGG pathway |
| N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity | 0.033362336 | GO:0003992 |
| defense response to bacterium | 0.034734861 | GO:0042742 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004231 | - | - |
| CRO_T004438 | - | - |
| CRO_T005778 | - | - |
| CRO_T005920 | - | - |
| CRO_T011301 | AT1G80600 (4.00E-34) | TUP5|TUMOR PRONE 5; WIN1|HOPW1-1-interacting 1 |
| CRO_T015926 | AT2G07689 (4.00E-18) | NADH-Ubiquinone/plastoquinone (complex I) protein |
| CRO_T024575 | - | - |
| CRO_T026279 | AT2G02590 (2.00E-74) | unknown protein |
| CRO_T026713 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000300 | Monoterpenoid biosynthesis mitochondrial translational termination cellular potassium ion homeostasis rescue of stalled ribosome interspecies interaction between organisms photosystem II repair photosystem II assembly 2-Oxocarboxylic acid metabolism primary root development translation release factor activity, codon nonspecific arginine biosynthetic process | details |
| TreatCFM000559 | details | |
| TreatCFM000790 | nuclear heterochromatin Golgi stack Golgi vesicle docking regulation of methylation-dependent chromatin silencing Golgi to plasma membrane protein transport maintenance of DNA methylation Taurine and hypotaurine metabolism detection of hypoxia peptidyl-cysteine oxidation anaerobic respiration Arginine and proline metabolism Autophagy - yeast recognition of pollen intra-Golgi vesicle-mediated transport | details |
| TreatCFM000860 | chloroplast thylakoid lumen photosystem II repair photosystem II assembly glucose transmembrane transporter activity sugar:proton symporter activity proton transport glucose transmembrane transport glucose import 2-alkenal reductase [NAD(P)] activity | details |
| TreatCFM001384 | details |
Expression profiles
 Show details about module gene expression profiling |