TreatCFM000353's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| negative regulation of indoleacetic acid biosynthetic process via tryptophan | 0.00196991 | GO:1901997 |
| shade avoidance | 0.00196991 | GO:0009641 |
| negative regulation of ethylene biosynthetic process | 0.00196991 | GO:0010366 |
| auxin biosynthetic process | 0.002215821 | GO:0009851 |
| methionine-oxo-acid transaminase activity | 0.004432624 | GO:0010326 |
| Transcription_related, Transcription factor: HSF | 0.011155366 | TF family |
| Transcription_related, Transcription factor: MYB | 0.024045297 | TF family |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000039 | - | - |
| CRO_T004208 | AT1G80360 (2.00E-74) | VAS1|reversal of sav3 phenotype 1 |
| CRO_T005757 | AT3G52380 (1.00E-13) | CP33|chloroplast RNA-binding protein 33; PDE322|PIGMENT DEFECTIVE 322 |
| CRO_T014211 | AT1G68320 (6.00E-69) | AtMYB62|myb domain protein 62 |
| CRO_T019528 | - | - |
| CRO_T020120 | AT5G54070 (4.00E-27) | AT-HSFA9|HEAT SHOCK TRANSCRIPTION FACTOR A9 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000185 | auxin biosynthetic process negative regulation of ethylene biosynthetic process lagging strand elongation copper ion export DNA ligation involved in DNA repair response to water shade avoidance negative regulation of indoleacetic acid biosynthetic process via tryptophan copper ion transport protein ADP-ribosylation regulation of transcription, DNA-templated | details |
| TreatCFM000337 | details | |
| TreatCFM000361 | Transcription_related, Transcription factor: EIL transcription factor activity, sequence-specific DNA binding regulation of transcription, DNA-templated Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) Transcription_related, Transcription factor: WRKY MAPK signaling pathway - plant | details |
| TreatCFM000433 | lipid A biosynthetic process hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 lipid IVA biosynthesis Lipopolysaccharide biosynthesis UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity | details |
Expression profiles
 Show details about module gene expression profiling |