TreatCFM000366's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Ribosome | 0.008884623 | KEGG pathway |
| translation | 0.010273417 | GO:0006412 |
| proton-transporting ATP synthase complex, coupling factor F(o) | 0.0121139 | GO:0045263 |
| nuclear matrix | 0.0121139 | GO:0016363 |
| mitochondrial membrane | 0.0121139 | GO:0031966 |
| Mpp10 complex | 0.012976301 | GO:0034457 |
| structural constituent of ribosome | 0.015800811 | GO:0003735 |
| rRNA primary transcript binding | 0.015800811 | GO:0042134 |
| ATP hydrolysis coupled proton transport | 0.016203795 | GO:0015991 |
| rRNA processing | 0.016203795 | GO:0006364 |
| ATP synthesis coupled proton transport | 0.016203795 | GO:0015986 |
| Regulation of actin cytoskeleton | 0.017703006 | KEGG pathway |
| snoRNA binding | 0.019251385 | GO:0030515 |
| hydrogen ion transmembrane transporter activity | 0.019251385 | GO:0015078 |
| large ribosomal subunit | 0.027993627 | GO:0015934 |
| lipid binding | 0.033056163 | GO:0008289 |
| Ribosome biogenesis in eukaryotes | 0.04161083 | KEGG pathway |
| small-subunit processome | 0.049997412 | GO:0032040 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T004524 | ATMG00080 (1.00E-35) | RPL16|ribosomal protein L16 |
| CRO_T006533 | AT1G63780 (2.00E-60) | IMP4|Ribosomal RNA processing Brix domain protein |
| CRO_T008957 | ATCG00830 (2.00E-17) | RPL2.1|ribosomal protein L2 |
| CRO_T010746 | - | - |
| CRO_T011659 | AT2G07671 (1.00E-16) | ATP synthase subunit C family protein |
| CRO_T032312 | AT2G35110 (1.00E-26) | GRL|GNARLED; NAP1|NCK-ASSOCIATED PROTEIN 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000030 | flavin biosynthesis I (bacteria and plants) | details |
| TreatCFM000063 | oleate biosynthesis I (plants) pyrimidine nucleotide metabolic process acyl-[acyl-carrier-protein] desaturase activity dCMP deaminase activity rRNA primary transcript binding nuclear matrix clathrin adaptor complex Mpp10 complex snoRNA binding zinc ion binding protein transporter activity Endocytosis Fatty acid metabolism Pyrimidine metabolism Ribosome biogenesis in eukaryotes small-subunit processome | details |
| TreatCFM000116 | details | |
| TreatCFM000172 | maintenance of meristem identity nuclear matrix Mpp10 complex rRNA primary transcript binding Ribosome biogenesis in eukaryotes snoRNA binding glucose transmembrane transporter activity sugar:proton symporter activity rRNA processing glucose import glucose transmembrane transport proton transport serine-type endopeptidase activity small-subunit processome | details |
| TreatCFM000251 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc 9,9'-dicis-carotene:quinone oxidoreductase activity 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity rRNA primary transcript binding maintenance of meristem identity nuclear matrix Mpp10 complex 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene Ribosome biogenesis in eukaryotes snoRNA binding transition metal ion binding cellular transition metal ion homeostasis metal ion transport rRNA processing hydrolase activity, acting on ester bonds small-subunit processome serine-type endopeptidase activity | details |
| TreatCFM000383 | rRNA primary transcript binding sodium ion transmembrane transporter activity aleurone grain snoRNA binding endoplasmic reticulum lumen nuclear matrix Mpp10 complex sodium ion transmembrane transport cysteine-type endopeptidase activity Ribosome biogenesis in eukaryotes rRNA processing extracellular space Lysosome proteolysis involved in cellular protein catabolic process small-subunit processome Transcription_related, Transcription factor: NAC | details |
| TreatCFM000746 | rRNA primary transcript binding snoRNA binding Ribosome biogenesis in eukaryotes nuclear matrix Mpp10 complex S-adenosylmethionine-dependent methyltransferase activity rRNA processing methylation | details |
Expression profiles
 Show details about module gene expression profiling |