TreatCFM000522's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| transporter activity | 0.004030643 | GO:0005215 |
| mitotic recombination | 0.005730654 | GO:0006312 |
| transport | 0.005730654 | GO:0006810 |
| DNA recombinase assembly | 0.005730654 | GO:0000730 |
| strand invasion | 0.005730654 | GO:0042148 |
| response to ionizing radiation | 0.005730654 | GO:0010212 |
| recombinase activity | 0.008670167 | GO:0000150 |
| four-way junction DNA binding | 0.008670167 | GO:0000400 |
| endodeoxyribonuclease activity | 0.008670167 | GO:0004520 |
| DNA-dependent ATPase activity | 0.010785556 | GO:0008094 |
| Homologous recombination | 0.011296492 | KEGG pathway |
| Smc5-Smc6 complex | 0.012142698 | GO:0030915 |
| single-stranded DNA binding | 0.014115596 | GO:0003697 |
| double-stranded DNA binding | 0.016489 | GO:0003690 |
| DNA repair | 0.028106773 | GO:0006281 |
| plasma membrane | 0.031984779 | GO:0005886 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001595 | AT1G51070 (1.00E-38) | bHLH115|basic Helix-Loop-Helix 115 |
| CRO_T002187 | AT1G51130 (2.00E-83) | Nse4, component of Smc5/6 DNA repair complex |
| CRO_T003597 | AT1G59740 (2.00E-110) | NPF4.3|NRT1/ PTR family 4.3 |
| CRO_T013451 | AT1G59740 (5.00E-117) | NPF4.3|NRT1/ PTR family 4.3 |
| CRO_T015130 | AT4G01575 (2.00E-17) | serine protease inhibitor, Kazal-type family protein |
| CRO_T025595 | AT2G19490 (1.00E-156) | RECA2|A. thaliana recA homolog 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000494 | heptaprenyl diphosphate biosynthesis hexaprenyl diphosphate biosynthesis nonaprenyl diphosphate biosynthesis I nonaprenyl diphosphate biosynthesis II octaprenyl diphosphate biosynthesis superpathway of plastoquinol biosynthesis Transcription_related, Transcription factor: BES1 trans-octaprenyltranstransferase activity all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity geranylgeranyl diphosphate biosynthesis polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) heptaprenyl diphosphate synthase activity 3'-5'-exoribonuclease activity N-acetyltransferase activity hydrolase activity | details |
| TreatCFM001229 | Signaling pathways regulating pluripotency of stem cells adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc chitinase activity thiol-dependent ubiquitin-specific protease activity Ubiquitin_Proteasome_system, DUB: USP Smc5-Smc6 complex RNA degradation polysaccharide binding root epidermal cell differentiation regulation of salicylic acid metabolic process cell wall macromolecule catabolic process response to nitrate seed development multidimensional cell growth chitin catabolic process protein deubiquitination response to heat cellulose biosynthetic process response to water deprivation response to cytokinin response to salt stress DNA repair ubiquitin-dependent protein catabolic process | details |
Expression profiles
 Show details about module gene expression profiling |