TreatCFM000718's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| cellulose biosynthesis | 0.004071992 | plantCyc |
| plant-type primary cell wall biogenesis | 0.006072695 | GO:0009833 |
| plant-type secondary cell wall biogenesis | 0.016178305 | GO:0009834 |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.016984843 | cazy family |
| cellulose biosynthetic process | 0.026245109 | GO:0030244 |
| ribonucleoside binding | 0.028286943 | GO:0032549 |
| cellulose synthase (UDP-forming) activity | 0.028286943 | GO:0016760 |
| DNA-directed RNA polymerase activity | 0.030939765 | GO:0003899 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001163 | - | - |
| CRO_T005715 | AT3G18090 (3.00E-113) | NRPD2B|nuclear RNA polymerase D2B |
| CRO_T013977 | AT1G02730 (0) | ATCSLD5|cellulose synthase-like D5; CSLD5|CELLULOSE SYNTHASE LIKE D5; SOS6|SALT OVERLY SENSITIVE 6 |
| CRO_T018909 | - | - |
| CRO_T025373 | - | - |
| CRO_T032765 | AT3G46450 (3.00E-105) | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000790 | nuclear heterochromatin Golgi stack Golgi vesicle docking regulation of methylation-dependent chromatin silencing Golgi to plasma membrane protein transport maintenance of DNA methylation Taurine and hypotaurine metabolism detection of hypoxia peptidyl-cysteine oxidation anaerobic respiration Arginine and proline metabolism Autophagy - yeast recognition of pollen intra-Golgi vesicle-mediated transport | details |
| TreatCFM001832 | Longevity regulating pathway - worm cellulose biosynthesis plant-type primary cell wall biogenesis plant-type secondary cell wall biogenesis formation of glycosidic bonds, GlycosylTransferases: GTnc cellulose biosynthetic process cellulose synthase (UDP-forming) activity cell wall organization | details |
Expression profiles
 Show details about module gene expression profiling |