TreatCFM000727's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| L-asparagine biosynthesis I | 0.00449683 | plantCyc |
| L-asparagine biosynthesis II | 0.00449683 | plantCyc |
| superpathway of L-asparagine biosynthesis | 0.00449683 | plantCyc |
| proteasome regulatory particle, lid subcomplex | 0.008095969 | GO:0008541 |
| membrane | 0.00875566 | GO:0016020 |
| L-glutamine degradation I | 0.009162155 | plantCyc |
| superpathway of aspartate and asparagine biosynthesis | 0.009162155 | plantCyc |
| phospholipid transport | 0.012846211 | GO:0015914 |
| regulation of protein catabolic process | 0.012846211 | GO:0042176 |
| Mitophagy - yeast | 0.012991417 | KEGG pathway |
| asparagine biosynthetic process | 0.013698374 | GO:0006529 |
| glutamine metabolic process | 0.02309211 | GO:0006541 |
| asparagine synthase (glutamine-hydrolyzing) activity | 0.024061032 | GO:0004066 |
| enzyme regulator activity | 0.024061032 | GO:0030234 |
| Endocytosis | 0.024616305 | KEGG pathway |
| Proteasome | 0.029769234 | KEGG pathway |
| regulation of catalytic activity | 0.031582631 | GO:0050790 |
| mRNA surveillance pathway | 0.03609876 | KEGG pathway |
| microtubule-severing ATPase activity | 0.044048066 | GO:0008568 |
| ubiquitin-dependent protein catabolic process | 0.047419411 | GO:0006511 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000142 | AT2G03667 (0) | Asparagine synthase family protein |
| CRO_T002875 | AT1G07020 (8.00E-17) | unknown protein |
| CRO_T006093 | AT1G27595 (6.00E-99) | |
| CRO_T014490 | AT5G13390 (0) | NEF1|NO EXINE FORMATION 1 |
| CRO_T027404 | AT1G03900 (3.00E-82) | ABCI18|ATP-binding cassette I18; ATNAP4|non-intrinsic ABC protein 4 |
| CRO_T033107 | AT3G13900 (2.00E-35) | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein |
| CRO_T033282 | AT2G26140 (1.00E-174) | ftsh4|FTSH protease 4 |
| CRO_T033712 | AT1G20200 (0) | EMB2719|EMBRYO DEFECTIVE 2719; HAP15|HAPLESS 15 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000728 | proteasome regulatory particle, lid subcomplex regulation of protein catabolic process phospholipid transport COPII vesicle coat enzyme regulator activity regulation of catalytic activity ER to Golgi vesicle-mediated transport ubiquitin-dependent protein catabolic process mRNA surveillance pathway Proteasome intracellular protein transport | details |
Expression profiles
 Show details about module gene expression profiling |