TreatCFM001027's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| xylan biosynthesis | 0.002892987 | plantCyc |
| hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc | 0.003447698 | cazy family |
| cellulose synthase (UDP-forming) activity | 0.008668196 | GO:0016760 |
| cellulase activity | 0.008668196 | GO:0008810 |
| Protein export | 0.009888963 | KEGG pathway |
| cellular component organization | 0.017211003 | GO:0016043 |
| cellulose catabolic process | 0.017211003 | GO:0030245 |
| adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 | 0.017211003 | cazy family |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.017608469 | cazy family |
| cellulose biosynthetic process | 0.022336651 | GO:0030244 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T012243 | AT3G22190 (6.00E-30) | IQD5|IQ-domain 5 |
| CRO_T013885 | AT3G57400 (7.00E-63) | unknown protein |
| CRO_T015089 | AT1G19940 (0) | AtGH9B5|glycosyl hydrolase 9B5 |
| CRO_T017051 | AT1G24490 (2.00E-92) | ALB4|ALBINA 4; ARTEMIS|ENVELOPE MEMBRANE INTEGRASE |
| CRO_T021294 | AT1G02730 (0) | ATCSLD5|cellulose synthase-like D5; CSLD5|CELLULOSE SYNTHASE LIKE D5; SOS6|SALT OVERLY SENSITIVE 6 |
| CRO_T021862 | AT2G27830 (2.00E-09) | unknown protein |
| CRO_T026749 | AT5G57700 (4.00E-138) | BNR/Asp-box repeat family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000524 | trans, trans-farnesyl diphosphate biosynthesis geranylgeranyl diphosphate biosynthesis polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) xylan biosynthesis Terpenoid backbone biosynthesis Z-farnesyl diphosphate synthase activity farnesyl diphosphate biosynthetic process geranyltranstransferase activity dimethylallyltranstransferase activity recognition of pollen cellulose synthase (UDP-forming) activity cellulose biosynthetic process | details |
| TreatCFM001052 | xylan biosynthesis malate transport polysaccharide catabolic process adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 formation of glycosidic bonds, GlycosylTransferases: GTnc hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc cellulose biosynthetic process Starch and sucrose metabolism plant-type vacuole membrane malate transmembrane transporter activity cellulose synthase (UDP-forming) activity cell wall organization | details |
| TreatCFM001348 | ubiquitin binding cellular component organization Plant-pathogen interaction Protein export plant-type cell wall organization hydrogen peroxide catabolic process Phenylpropanoid biosynthesis cellular oxidant detoxification response to oxidative stress | details |
| TreatCFM002066 | 3-dehydroquinate biosynthesis I queuine tRNA-ribosyltransferase activity 3-deoxy-7-phosphoheptulonate synthase activity queuosine biosynthetic process aromatic amino acid family biosynthetic process glucan endo-1,3-beta-D-glucosidase activity cellulase activity cellulose catabolic process adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc lyase activity Biosynthesis of amino acids Starch and sucrose metabolism cell redox homeostasis | details |
Expression profiles
 Show details about module gene expression profiling |