TreatCFM001033's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| endomembrane system organization | 0.003217847 | GO:0010256 |
| ncRNA processing | 0.003217847 | GO:0034470 |
| xyloglucan biosynthetic process | 0.003217847 | GO:0009969 |
| fucose biosynthetic process | 0.003217847 | GO:0042353 |
| ribonuclease activity | 0.004432624 | GO:0004540 |
| RNA phosphodiester bond hydrolysis | 0.004503988 | GO:0090501 |
| salicylic acid mediated signaling pathway | 0.012317776 | GO:0009863 |
| integral component of Golgi membrane | 0.013291978 | GO:0030173 |
| unidimensional cell growth | 0.013306479 | GO:0009826 |
| aerobic respiration I (cytochrome c) | 0.016203795 | plantCyc |
| aerobic respiration III (alternative oxidase pathway) | 0.016203795 | plantCyc |
| NAD/NADH phosphorylation and dephosphorylation | 0.016203795 | plantCyc |
| xyloglucan biosynthesis | 0.016203795 | plantCyc |
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.018573055 | cazy family |
| intracellular ribonucleoprotein complex | 0.025060736 | GO:0030529 |
| RNA transport | 0.026828752 | KEGG pathway |
| trans-Golgi network | 0.039221737 | GO:0005802 |
| endosome | 0.039221737 | GO:0005768 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001697 | AT4G04180 (0) | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| CRO_T009580 | AT5G04830 (4.00E-57) | Nuclear transport factor 2 (NTF2) family protein |
| CRO_T011435 | AT2G20370 (0) | KAM1|KATAMARI 1; MUR3|MURUS 3; RSA3|SHORT ROOT IN SALT MEDIUM 3 |
| CRO_T011469 | AT5G25150 (2.00E-23) | TAF5|TBP-associated factor 5 |
| CRO_T018349 | AT3G53360 (1.00E-97) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T023828 | AT2G43190 (2.00E-20) | POP4|similar to yeast POP4 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000032 | details | |
| TreatCFM000075 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K defense response, incompatible interaction endomembrane system organization xyloglucan biosynthetic process activation of MAPK activity fucose biosynthetic process MAP kinase kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase activity integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis MAPK cascade MAPK signaling pathway - plant transferase activity, transferring glycosyl groups | details |
| TreatCFM000118 | Ubiquitin_Proteasome_system, DUB: JAMM formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
| TreatCFM000143 | xyloglucan biosynthetic process endomembrane system organization fucose biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis trans-Golgi network endosome transferase activity, transferring glycosyl groups dioxygenase activity | details |
| TreatCFM000181 | ethanolamine-phosphate cytidylyltransferase activity endomembrane system organization xyloglucan biosynthetic process fucose biosynthetic process integral component of Golgi membrane integral component of mitochondrial outer membrane salicylic acid mediated signaling pathway unidimensional cell growth phosphatidylethanolamine biosynthesis II xyloglucan biosynthesis aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation biosynthetic process transferase activity, transferring glycosyl groups Lysine degradation Glycerophospholipid metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E3 adaptor: BTB Ubiquitin_Proteasome_system, E3 adaptor: SKP1 | details |
| TreatCFM000247 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K xyloglucan biosynthetic process endomembrane system organization fucose biosynthetic process activation of MAPK activity defense response, incompatible interaction MAP kinase kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase activity salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis MAPK cascade MAPK signaling pathway - plant | details |
| TreatCFM000272 | xyloglucan biosynthetic process endomembrane system organization cellular response to gravity fucose biosynthetic process | details |
| TreatCFM000273 | xyloglucan biosynthetic process endomembrane system organization fucose biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth transferase activity, transferring glycosyl groups aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis intracellular protein transport | details |
| TreatCFM000276 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K xyloglucan biosynthetic process defense response, incompatible interaction endomembrane system organization activation of MAPK activity fucose biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase kinase activity aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis salicylic acid mediated signaling pathway DNA recombination unidimensional cell growth MAPK signaling pathway - plant MAP kinase activity MAPK cascade integral component of Golgi membrane | details |
| TreatCFM000281 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K defense response, incompatible interaction endomembrane system organization xyloglucan biosynthetic process activation of MAPK activity fucose biosynthetic process MAP kinase kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase activity integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis MAPK cascade MAPK signaling pathway - plant transferase activity, transferring glycosyl groups | details |
| TreatCFM000282 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K defense response, incompatible interaction endomembrane system organization xyloglucan biosynthetic process activation of MAPK activity fucose biosynthetic process MAP kinase kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase activity integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis MAPK cascade MAPK signaling pathway - plant transferase activity, transferring glycosyl groups | details |
| TreatCFM000286 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K defense response, incompatible interaction endomembrane system organization xyloglucan biosynthetic process activation of MAPK activity fucose biosynthetic process MAP kinase kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase activity integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis MAPK cascade MAPK signaling pathway - plant transferase activity, transferring glycosyl groups | details |
| TreatCFM000291 | endomembrane system organization fucose biosynthetic process xyloglucan biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis endosome trans-Golgi network | details |
| TreatCFM000319 | endomembrane system organization fucose biosynthetic process defense response, incompatible interaction activation of MAPK activity xyloglucan biosynthetic process lipid transporter activity MAP kinase kinase activity MAP kinase activity Protein_kinases_phosphatases, PPC:4.1.4: MAP2K lipid transport salicylic acid mediated signaling pathway aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis unidimensional cell growth MAPK cascade adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII | details |
| TreatCFM000356 | adenosine ribonucleotides de novo biosynthesis Protein_kinases_phosphatases, PPC:4.1.4: MAP2K Transcription_related, Transcription regulator: LUG xyloglucan biosynthetic process endomembrane system organization fucose biosynthetic process defense response, incompatible interaction activation of MAPK activity 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene vacuolar proton-transporting V-type ATPase, V1 domain glycerol-3-phosphate O-acyltransferase activity 9,9'-dicis-carotene:quinone oxidoreductase activity MAP kinase kinase activity 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity cutin biosynthetic process integral component of Golgi membrane formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase activity glycerol-3-phosphate 2-O-acyltransferase activity galactosyltransferase activity phosphatase activity | details |
| TreatCFM000363 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K defense response, incompatible interaction endomembrane system organization xyloglucan biosynthetic process activation of MAPK activity fucose biosynthetic process MAP kinase kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase activity integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis MAPK cascade MAPK signaling pathway - plant transferase activity, transferring glycosyl groups | details |
| TreatCFM000385 | xyloglucan biosynthetic process endomembrane system organization fucose biosynthetic process | details |
| TreatCFM000398 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K defense response, incompatible interaction endomembrane system organization xyloglucan biosynthetic process activation of MAPK activity fucose biosynthetic process MAP kinase kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase activity integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis MAPK cascade MAPK signaling pathway - plant transferase activity, transferring glycosyl groups | details |
| TreatCFM000402 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K defense response, incompatible interaction endomembrane system organization xyloglucan biosynthetic process activation of MAPK activity fucose biosynthetic process MAP kinase kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase activity integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis MAPK cascade MAPK signaling pathway - plant transferase activity, transferring glycosyl groups | details |
| TreatCFM000463 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K endomembrane system organization fucose biosynthetic process xyloglucan biosynthetic process defense response, incompatible interaction activation of MAPK activity MAP kinase kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase activity integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis MAPK cascade MAPK signaling pathway - plant | details |
| TreatCFM000466 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K defense response, incompatible interaction endomembrane system organization xyloglucan biosynthetic process activation of MAPK activity fucose biosynthetic process MAP kinase kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc integral component of Golgi membrane salicylic acid mediated signaling pathway MAP kinase activity unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis MAPK cascade MAPK signaling pathway - plant | details |
| TreatCFM000472 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K defense response, incompatible interaction endomembrane system organization xyloglucan biosynthetic process activation of MAPK activity fucose biosynthetic process MAP kinase kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase activity integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis MAPK cascade MAPK signaling pathway - plant transferase activity, transferring glycosyl groups | details |
| TreatCFM000516 | intracellular fucose biosynthetic process xyloglucan biosynthetic process endomembrane system organization formation of glycosidic bonds, GlycosylTransferases: GTnc integral component of Golgi membrane | details |
| TreatCFM000517 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K fucose biosynthetic process defense response, incompatible interaction xyloglucan biosynthetic process activation of MAPK activity endomembrane system organization MAP kinase kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase activity integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis MAPK cascade MAPK signaling pathway - plant | details |
| TreatCFM000532 | activation of MAPK activity xyloglucan biosynthetic process defense response, incompatible interaction fucose biosynthetic process endomembrane system organization Protein_kinases_phosphatases, PPC:4.1.4: MAP2K MAP kinase kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: G2-like MAP kinase activity aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth phosphorelay signal transduction system MAPK cascade | details |
| TreatCFM000537 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K defense response, incompatible interaction endomembrane system organization xyloglucan biosynthetic process activation of MAPK activity fucose biosynthetic process MAP kinase kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase activity integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis MAPK cascade MAPK signaling pathway - plant transferase activity, transferring glycosyl groups | details |
| TreatCFM000560 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K endomembrane system organization defense response, incompatible interaction fucose biosynthetic process activation of MAPK activity xyloglucan biosynthetic process MAP kinase kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase activity integral component of Golgi membrane aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis salicylic acid mediated signaling pathway unidimensional cell growth MAPK signaling pathway - plant MAPK cascade transferase activity, transferring glycosyl groups | details |
| TreatCFM000568 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K xyloglucan biosynthetic process defense response, incompatible interaction activation of MAPK activity fucose biosynthetic process endomembrane system organization formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase kinase activity aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis integral component of Golgi membrane MAPK signaling pathway - plant MAP kinase activity salicylic acid mediated signaling pathway unidimensional cell growth MAPK cascade | details |
| TreatCFM000578 | xyloglucan biosynthetic process fucose biosynthetic process endomembrane system organization formation of glycosidic bonds, GlycosylTransferases: GTnc integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis | details |
| TreatCFM000581 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K endomembrane system organization fucose biosynthetic process xyloglucan biosynthetic process defense response, incompatible interaction activation of MAPK activity MAP kinase kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase activity integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis MAPK cascade MAPK signaling pathway - plant | details |
| TreatCFM000584 | fucose biosynthetic process endomembrane system organization xyloglucan biosynthetic process Oxidative phosphorylation aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis salicylic acid mediated signaling pathway aerobic respiration formation of glycosidic bonds, GlycosylTransferases: GTnc unidimensional cell growth Transcription_related, Transcription factor: HB integral component of Golgi membrane hydrogen ion transmembrane transport | details |
| TreatCFM000609 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K defense response, incompatible interaction endomembrane system organization xyloglucan biosynthetic process activation of MAPK activity fucose biosynthetic process MAP kinase kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc integral component of Golgi membrane salicylic acid mediated signaling pathway MAP kinase activity unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis MAPK cascade MAPK signaling pathway - plant | details |
| TreatCFM000624 | xyloglucan biosynthetic process endomembrane system organization fucose biosynthetic process production of siRNA involved in RNA interference RNA phosphodiester bond hydrolysis formation of glycosidic bonds, GlycosylTransferases: GTnc RISC complex integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis ribonuclease III activity translational initiation translation initiation factor activity transferase activity, transferring glycosyl groups | details |
| TreatCFM000638 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K xyloglucan biosynthetic process defense response, incompatible interaction activation of MAPK activity fucose biosynthetic process endomembrane system organization production of siRNA involved in RNA interference RNA phosphodiester bond hydrolysis formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase kinase activity RISC complex integral component of Golgi membrane MAP kinase activity ribonuclease III activity salicylic acid mediated signaling pathway aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis unidimensional cell growth MAPK cascade MAPK signaling pathway - plant cytoplasm | details |
| TreatCFM000661 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K fucose biosynthetic process defense response, incompatible interaction xyloglucan biosynthetic process activation of MAPK activity endomembrane system organization MAP kinase kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase activity integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis MAPK cascade MAPK signaling pathway - plant | details |
| TreatCFM000675 | adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:4.1.4: MAP2K endomembrane system organization fucose biosynthetic process xyloglucan biosynthetic process defense response, incompatible interaction activation of MAPK activity MAP kinase kinase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds cell wall macromolecule catabolic process | details |
| TreatCFM000702 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K fucose biosynthetic process defense response, incompatible interaction endomembrane system organization xyloglucan biosynthetic process activation of MAPK activity formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase kinase activity aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis integral component of Golgi membrane salicylic acid mediated signaling pathway MAP kinase activity unidimensional cell growth MAPK cascade | details |
| TreatCFM000707 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K endomembrane system organization defense response, incompatible interaction fucose biosynthetic process activation of MAPK activity xyloglucan biosynthetic process MAP kinase kinase activity polyneuridine-aldehyde esterase activity Indole alkaloid biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase activity alkaloid metabolic process integral component of Golgi membrane salicylic acid mediated signaling pathway aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis unidimensional cell growth MAPK cascade MAPK signaling pathway - plant transferase activity, transferring glycosyl groups | details |
| TreatCFM000721 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K endomembrane system organization fucose biosynthetic process xyloglucan biosynthetic process defense response, incompatible interaction activation of MAPK activity MAP kinase kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc integral component of Golgi membrane salicylic acid mediated signaling pathway MAP kinase activity unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis MAPK cascade MAPK signaling pathway - plant | details |
| TreatCFM000737 | endomembrane system organization xyloglucan biosynthetic process fucose biosynthetic process megagametogenesis integral component of Golgi membrane salicylic acid mediated signaling pathway Ribosome biogenesis in eukaryotes transferase activity, transferring glycosyl groups unidimensional cell growth formation of glycosidic bonds, GlycosylTransferases: GTnc rRNA processing aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) glycolysis I (from glucose 6-phosphate) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis | details |
| TreatCFM000815 | xyloglucan biosynthetic process fucose biosynthetic process endomembrane system organization formation of glycosidic bonds, GlycosylTransferases: GTnc integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth transferase activity, transferring glycosyl groups aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) indole-3-acetyl-amide conjugate biosynthesis NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis trans-Golgi network endosome | details |
| TreatCFM000875 | fucose biosynthetic process endomembrane system organization xyloglucan biosynthetic process Lysosome lipid transporter activity lipid transport salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII integral component of Golgi membrane | details |
| TreatCFM000891 | xyloglucan biosynthetic process endomembrane system organization fucose biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth transferase activity, transferring glycosyl groups aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis | details |
| TreatCFM000905 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K fucose biosynthetic process defense response, incompatible interaction xyloglucan biosynthetic process activation of MAPK activity endomembrane system organization MAP kinase kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase activity integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis MAPK cascade MAPK signaling pathway - plant | details |
| TreatCFM000911 | ethanolamine-phosphate cytidylyltransferase activity xyloglucan biosynthetic process endomembrane system organization fucose biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc integral component of mitochondrial outer membrane integral component of Golgi membrane Glycerophospholipid metabolism salicylic acid mediated signaling pathway unidimensional cell growth phosphatidylethanolamine biosynthesis II xyloglucan biosynthesis aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation biosynthetic process transferase activity, transferring glycosyl groups | details |
| TreatCFM000921 | formation of glycosidic bonds, GlycosylTransferases: GTnc fucose biosynthetic process xyloglucan biosynthetic process endomembrane system organization ncRNA processing RNA phosphodiester bond hydrolysis ribonuclease activity ribosomal small subunit biogenesis megagametogenesis salicylic acid mediated signaling pathway unidimensional cell growth integral component of Golgi membrane aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) CDP-diacylglycerol biosynthesis I diacylglycerol and triacylglycerol biosynthesis glycolysis I (from glucose 6-phosphate) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis Glutathione metabolism Glycerolipid metabolism rRNA processing | details |
| TreatCFM000952 | MAPK signaling pathway - plant Protein_kinases_phosphatases, PPC:4.1.4: MAP2K Transcription_related, Transcription factor: EIL fucose biosynthetic process defense response, incompatible interaction xyloglucan biosynthetic process activation of MAPK activity endomembrane system organization MAP kinase kinase activity MAP kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis MAPK cascade | details |
| TreatCFM000977 | formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:4.1.4: MAP2K fucose biosynthetic process defense response, incompatible interaction activation of MAPK activity endomembrane system organization xyloglucan biosynthetic process MAP kinase kinase activity integral component of Golgi membrane aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis salicylic acid mediated signaling pathway unidimensional cell growth MAP kinase activity MAPK cascade N-Glycan biosynthesis MAPK signaling pathway - plant | details |
| TreatCFM001016 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K fucose biosynthetic process defense response, incompatible interaction activation of MAPK activity endomembrane system organization xyloglucan biosynthetic process polyneuridine-aldehyde esterase activity MAP kinase kinase activity Indole alkaloid biosynthesis formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase activity alkaloid metabolic process integral component of Golgi membrane salicylic acid mediated signaling pathway aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis unidimensional cell growth MAPK cascade MAPK signaling pathway - plant | details |
| TreatCFM001038 | thiosulfate disproportionation IV (rhodanese) Ubiquitin_Proteasome_system, E3 adaptor: DWD spliceosomal snRNP assembly protein import into peroxisome matrix fatty acid beta-oxidation response to UV-B Ubiquitin_Proteasome_system, E2: UBC Sulfur metabolism U4/U6 x U5 tri-snRNP complex U1 snRNP small nucleolar ribonucleoprotein complex Cul4-RING E3 ubiquitin ligase complex U5 snRNP U2 snRNP precatalytic spliceosome catalytic step 2 spliceosome viral nucleocapsid DNA repair Ubiquitin mediated proteolysis ubiquitin protein ligase binding damaged DNA binding | details |
| TreatCFM001053 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K fucose biosynthetic process defense response, incompatible interaction xyloglucan biosynthetic process activation of MAPK activity endomembrane system organization MAP kinase kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase activity integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis MAPK cascade MAPK signaling pathway - plant | details |
| TreatCFM001112 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K endomembrane system organization fucose biosynthetic process xyloglucan biosynthetic process defense response, incompatible interaction activation of MAPK activity MAP kinase kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase activity integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis MAPK cascade MAPK signaling pathway - plant | details |
| TreatCFM001114 | xyloglucan biosynthetic process endomembrane system organization fucose biosynthetic process integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth formation of glycosidic bonds, GlycosylTransferases: GTnc aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) glycolysis I (from glucose 6-phosphate) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII | details |
| TreatCFM001115 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K fucose biosynthetic process defense response, incompatible interaction xyloglucan biosynthetic process activation of MAPK activity endomembrane system organization MAP kinase kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase activity integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis MAPK cascade MAPK signaling pathway - plant | details |
| TreatCFM001120 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K endomembrane system organization defense response, incompatible interaction fucose biosynthetic process activation of MAPK activity xyloglucan biosynthetic process MAP kinase kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc DNA integration integral component of Golgi membrane salicylic acid mediated signaling pathway MAP kinase activity aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis unidimensional cell growth MAPK cascade MAPK signaling pathway - plant | details |
| TreatCFM001145 | endomembrane system organization fucose biosynthetic process xyloglucan biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth transferase activity, transferring glycosyl groups aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis endosome trans-Golgi network | details |
| TreatCFM001189 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K endomembrane system organization fucose biosynthetic process xyloglucan biosynthetic process defense response, incompatible interaction activation of MAPK activity MAP kinase kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase activity integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis MAPK cascade MAPK signaling pathway - plant | details |
| TreatCFM001306 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K defense response, incompatible interaction endomembrane system organization xyloglucan biosynthetic process activation of MAPK activity fucose biosynthetic process MAP kinase kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase activity integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis MAPK cascade MAPK signaling pathway - plant transferase activity, transferring glycosyl groups | details |
| TreatCFM001307 | xyloglucan biosynthetic process fucose biosynthetic process endomembrane system organization formation of glycosidic bonds, GlycosylTransferases: GTnc integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth transferase activity, transferring glycosyl groups aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis trans-Golgi network endosome | details |
| TreatCFM001409 | xyloglucan biosynthetic process endomembrane system organization fucose biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth transferase activity, transferring glycosyl groups aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis | details |
| TreatCFM001416 | Protein_kinases_phosphatases, PPC:4.1.4: MAP2K defense response, incompatible interaction endomembrane system organization xyloglucan biosynthetic process activation of MAPK activity fucose biosynthetic process MAP kinase kinase activity formation of glycosidic bonds, GlycosylTransferases: GTnc MAP kinase activity integral component of Golgi membrane salicylic acid mediated signaling pathway unidimensional cell growth aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis MAPK cascade MAPK signaling pathway - plant transferase activity, transferring glycosyl groups | details |
| TreatCFM001484 | fucose biosynthetic process endomembrane system organization xyloglucan biosynthetic process formation of glycosidic bonds, GlycosylTransferases: GTnc polyamine transmembrane transporter activity L-amino acid transmembrane transporter activity polyamine transmembrane transport aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis salicylic acid mediated signaling pathway integral component of Golgi membrane unidimensional cell growth amino acid transmembrane transport Purine metabolism antiporter activity transferase activity, transferring glycosyl groups | details |
| TreatCFM001493 | activation of MAPK activity defense response, incompatible interaction fucose biosynthetic process xyloglucan biosynthetic process endomembrane system organization Ribosome MAP kinase kinase activity lipid transporter activity Protein_kinases_phosphatases, PPC:4.1.4: MAP2K structural constituent of ribosome 5S rRNA binding MAP kinase activity translation lipid transport salicylic acid mediated signaling pathway unidimensional cell growth adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII integral component of Golgi membrane MAPK cascade aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) detoxification of reactive carbonyls in chloroplasts Flavonoid biosynthesis flavonoid biosynthesis (in equisetum) leucodelphinidin biosynthesis NAD/NADH phosphorylation and dephosphorylation pinobanksin biosynthesis xyloglucan biosynthesis Lysosome single-organism metabolic process | details |
| TreatCFM001494 | small-subunit processome nucleolus formation of glycosidic bonds, GlycosylTransferases: GTnc adenosine deaminase activity ribonuclease activity RNA binding U3 snoRNA binding 5S rRNA binding actin cytoskeleton organization endomembrane system organization ribosomal small subunit biogenesis RNA phosphodiester bond hydrolysis ncRNA processing xyloglucan biosynthetic process fucose biosynthetic process ribosomal large subunit export from nucleus embryo development integral component of Golgi membrane megagametogenesis ribosomal large subunit biogenesis aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xyloglucan biosynthesis salicylic acid mediated signaling pathway unidimensional cell growth maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) rRNA processing cell intracellular ribonucleoprotein complex RNA processing | details |
Expression profiles
 Show details about module gene expression profiling |