TreatCFM001098's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| recycling endosome | 0.004048762 | GO:0055037 |
| nuclear pore outer ring | 0.005059831 | GO:0031080 |
| Rab guanyl-nucleotide exchange factor activity | 0.005212381 | GO:0017112 |
| MAP kinase tyrosine/serine/threonine phosphatase activity | 0.005212381 | GO:0017017 |
| response to UV-C | 0.006771466 | GO:0010225 |
| inactivation of MAPK activity | 0.006771466 | GO:0000188 |
| leucine catabolic process | 0.009026621 | GO:0006552 |
| iron-sulfur cluster binding | 0.014964571 | GO:0051536 |
| protein tyrosine phosphatase activity | 0.014964571 | GO:0004725 |
| response to UV-B | 0.015787251 | GO:0010224 |
| peptidyl-tyrosine dephosphorylation | 0.017134113 | GO:0035335 |
| RNA transport | 0.026828752 | KEGG pathway |
| response to salt stress | 0.028930655 | GO:0009651 |
| positive regulation of GTPase activity | 0.028930655 | GO:0043547 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T000143 | AT1G69250 (4.00E-18) | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain |
| CRO_T011483 | - | - |
| CRO_T018374 | AT3G55270 (0) | ATMKP1|ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1; MKP1|mitogen-activated protein kinase phosphatase 1 |
| CRO_T019367 | AT2G43400 (1.00E-109) | ETFQO|electron-transfer flavoprotein:ubiquinone oxidoreductase |
| CRO_T023194 | AT4G30840 (2.00E-106) | Transducin/WD40 repeat-like superfamily protein |
| CRO_T024754 | AT1G73930 (0) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001000 | recycling endosome Thyroid hormone signaling pathway Rab guanyl-nucleotide exchange factor activity formation of glycosidic bonds, GlycosylTransferases: GTnc Ubiquitin_Proteasome_system, E2: UBC Transcription_related, Transcription factor: MYB ubiquitin protein ligase binding cell wall organization positive regulation of GTPase activity protein ubiquitination transferase activity, transferring glycosyl groups ubiquitin protein ligase activity Golgi membrane | details |
| TreatCFM001449 | recycling endosome mannitol degradation II Thyroid hormone signaling pathway Rab guanyl-nucleotide exchange factor activity sinapyl alcohol dehydrogenase activity cinnamyl-alcohol dehydrogenase activity Protein_kinases_phosphatases, PPC:4.2.1: Calcium Dependent Protein Kinase Transcription_related, Transcription regulator: PHD calcium-dependent protein serine/threonine kinase activity zinc ion binding calmodulin-dependent protein kinase activity actin binding Phenylpropanoid biosynthesis regulation of stomatal movement actin filament organization peptidyl-serine phosphorylation protein autophosphorylation positive regulation of GTPase activity abscisic acid-activated signaling pathway calmodulin binding Transcription_related, Transcription factor: MYB | details |
Expression profiles
 Show details about module gene expression profiling |