TreatCFM001125's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.002659181 | cazy family |
| starch biosynthesis | 0.003895237 | plantCyc |
| voltage-gated chloride channel activity | 0.00857839 | GO:0005247 |
| glucose-1-phosphate adenylyltransferase activity | 0.00857839 | GO:0008878 |
| dolichyl-diphosphooligosaccharide-protein glycotransferase activity | 0.00857839 | GO:0004579 |
| integral component of membrane | 0.01013775 | GO:0016021 |
| post-translational protein modification | 0.010595305 | GO:0043687 |
| glycogen biosynthetic process | 0.010595305 | GO:0005978 |
| protein N-linked glycosylation via asparagine | 0.010595305 | GO:0018279 |
| chloride transport | 0.010595305 | GO:0006821 |
| starch biosynthetic process | 0.011552538 | GO:0019252 |
| regulation of anion transmembrane transport | 0.011552538 | GO:1903959 |
| oligosaccharyltransferase complex | 0.012867585 | GO:0008250 |
| ion transmembrane transport | 0.018682011 | GO:0034220 |
| nucleotidyltransferase activity | 0.027291141 | GO:0016779 |
| N-Glycan biosynthesis | 0.035892792 | KEGG pathway |
| RNA degradation | 0.035892792 | KEGG pathway |
| S-adenosylmethionine-dependent methyltransferase activity | 0.040368525 | GO:0008757 |
| Starch and sucrose metabolism | 0.042500872 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002440 | AT1G13860 (0) | QUL1|QUASIMODO2 LIKE 1 |
| CRO_T012729 | AT1G55620 (0) | CLC-F|chloride channel F |
| CRO_T014139 | AT4G00060 (2.00E-18) | MEE44|maternal effect embryo arrest 44 |
| CRO_T016240 | AT1G34130 (7.00E-48) | STT3B|staurosporin and temperature sensitive 3-like b |
| CRO_T020900 | AT1G52420 (0) | UDP-Glycosyltransferase superfamily protein |
| CRO_T033478 | AT1G27680 (0) | APL2|ADPGLC-PPase large subunit |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000861 | translational frameshifting positive regulation of translational elongation positive regulation of translational termination abscisic acid biosynthesis cellulose biosynthesis pyrimidine deoxyribonucleotides de novo biosynthesis I pyrimidine ribonucleotides interconversion Purine metabolism microtubule-based movement cellulose biosynthetic process translational initiation | details |
| TreatCFM001228 | positive regulation of translational elongation positive regulation of translational termination translational frameshifting Insulin signaling pathway exocyst RNA degradation exocytosis translational initiation ribosome binding nucleotidyltransferase activity translation elongation factor activity nucleotide binding translation initiation factor activity | details |
| TreatCFM001347 | nuclear ubiquitin ligase complex Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) positive regulation of translational elongation organ senescence detection of nutrient vegetative phase change translational frameshifting positive regulation of translational termination developmental process involved in reproduction sugar mediated signaling pathway primary root development Apelin signaling pathway RNA degradation abscisic acid-activated signaling pathway translational initiation | details |
| TreatCFM001718 | AP-type membrane coat adaptor complex voltage-gated chloride channel activity chloride transport meristem development retrograde transport, vesicle recycling within Golgi endosomal transport Golgi vesicle prefusion complex stabilization anatomical structure morphogenesis Endocytosis Golgi transport complex regulation of anion transmembrane transport Golgi organization single-organism developmental process retrograde vesicle-mediated transport, Golgi to ER vesicle docking ion transmembrane transport exocytosis protein serine/threonine phosphatase activity | details |
| TreatCFM001978 | formation of glycosidic bonds, GlycosylTransferases: GTnc xylan biosynthesis transferase activity anisotropic cell growth Golgi vesicle prefusion complex stabilization retrograde transport, vesicle recycling within Golgi Golgi organization retrograde vesicle-mediated transport, Golgi to ER histone acetylation cellulose biosynthetic process mRNA splicing, via spliceosome Spliceosome histone acetyltransferase complex S-adenosylmethionine-dependent methyltransferase activity ligase activity Golgi transport complex spliceosomal complex | details |
Expression profiles
 Show details about module gene expression profiling |