TreatCFM001295's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| ESCRT I complex | 0.003412919 | GO:0000813 |
| L-homoserine biosynthesis | 0.003722194 | plantCyc |
| L-lysine biosynthesis VI | 0.004029875 | plantCyc |
| isoleucine biosynthetic process | 0.009474451 | GO:0009097 |
| methionine biosynthetic process | 0.009474451 | GO:0009086 |
| DNA catabolic process | 0.009474451 | GO:0006308 |
| threonine biosynthetic process | 0.009474451 | GO:0009088 |
| protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway | 0.009474451 | GO:0043328 |
| homoserine dehydrogenase activity | 0.010490142 | GO:0004412 |
| protein complex binding | 0.010490142 | GO:0032403 |
| aspartate kinase activity | 0.010490142 | GO:0004072 |
| endonuclease activity | 0.028053791 | GO:0004519 |
| phosphoprotein phosphatase activity | 0.029441702 | GO:0004721 |
| NADP binding | 0.029441702 | GO:0050661 |
| amino acid binding | 0.029441702 | GO:0016597 |
| Biosynthesis of amino acids | 0.030760952 | KEGG pathway |
| Endocytosis | 0.030760952 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002576 | AT4G05000 (9.00E-97) | VPS28-1|vacuolar protein sorting-associated protein 28 homolog 1 |
| CRO_T002818 | AT4G21585 (8.00E-119) | ENDO4|endonuclease 4 |
| CRO_T005682 | - | - |
| CRO_T009189 | AT4G06599 (1.00E-78) | ubiquitin family protein |
| CRO_T018260 | - | - |
| CRO_T020163 | - | - |
| CRO_T028964 | AT5G21060 (9.00E-35) | Glyceraldehyde-3-phosphate dehydrogenase-like family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000015 | allantoin degradation to glyoxylate II allantoin degradation to ureidoglycolate II (ammonia producing) phytol salvage pathway | details |
| TreatCFM000883 | cytosolic small ribosomal subunit | details |
| TreatCFM001023 | L-homoserine biosynthesis L-lysine biosynthesis VI sesaminol glucoside biosynthesis threonine biosynthetic process methionine biosynthetic process isoleucine biosynthetic process core mediator complex homoserine dehydrogenase activity aspartate kinase activity mediator complex proton-transporting ATP synthase complex, catalytic core F(1) RNA polymerase II transcription cofactor activity proton-transporting ATPase activity, rotational mechanism proton-transporting ATP synthase activity, rotational mechanism transferase activity, transferring hexosyl groups amino acid binding NADP binding ATP hydrolysis coupled proton transport ribosomal large subunit assembly ATP synthesis coupled proton transport regulation of transcription from RNA polymerase II promoter formation of glycosidic bonds, GlycosylTransferases: GTnc | details |
Expression profiles
 Show details about module gene expression profiling |