TreatCFM001339's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 0.001329237 | cazy family |
| L-galactose dehydrogenase activity | 0.004514044 | GO:0010349 |
| sphingolipid delta-4 desaturase activity | 0.004514044 | GO:0042284 |
| pyridoxal 4-dehydrogenase activity | 0.004514044 | GO:0050235 |
| L-ascorbate biosynthesis I (L-galactose pathway) | 0.008358372 | plantCyc |
| sphingolipid biosynthesis (plants) | 0.008358372 | plantCyc |
| intramolecular transferase activity | 0.011842364 | GO:0016866 |
| sphingolipid biosynthetic process | 0.021983788 | GO:0030148 |
| L-ascorbic acid biosynthetic process | 0.021983788 | GO:0019853 |
| Ascorbate and aldarate metabolism | 0.027952452 | KEGG pathway |
| SNARE interactions in vesicular transport | 0.027952452 | KEGG pathway |
| Sphingolipid metabolism | 0.027952452 | KEGG pathway |
| SNARE binding | 0.043819907 | GO:0000149 |
| SNAP receptor activity | 0.043819907 | GO:0005484 |
| aspartic-type endopeptidase activity | 0.044264828 | GO:0004190 |
| Amino sugar and nucleotide sugar metabolism | 0.044460813 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003260 | AT1G11250 (4.00E-53) | SYP125|syntaxin of plants 125 |
| CRO_T010147 | AT4G33670 (1.00E-114) | NAD(P)-linked oxidoreductase superfamily protein |
| CRO_T013861 | AT1G65240 (3.00E-29) | Eukaryotic aspartyl protease family protein |
| CRO_T016756 | AT2G05260 (2.00E-36) | alpha/beta-Hydrolases superfamily protein |
| CRO_T019045 | AT3G08900 (9.00E-178) | RGP3|reversibly glycosylated polypeptide 3 |
| CRO_T023750 | AT2G20790 (3.00E-129) | clathrin adaptor complexes medium subunit family protein |
| CRO_T024230 | AT1G55690 (8.00E-35) | Sec14p-like phosphatidylinositol transfer family protein |
| CRO_T026604 | AT5G39570 (5.00E-27) | unknown protein |
| CRO_T027363 | AT4G04930 (7.00E-162) | DES-1-LIKE|fatty acid desaturase family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001096 | L-leucine biosynthesis Legionellosis Toll and Imd signaling pathway Ubiquitin_Proteasome_system, E2: UBC protein K63-linked ubiquitination postreplication repair 2-Oxocarboxylic acid metabolism hydro-lyase activity response to stimulus cellular amino acid biosynthetic process protein catabolic process 4 iron, 4 sulfur cluster binding aspartic-type endopeptidase activity ubiquitin protein ligase binding isomerase activity | details |
| TreatCFM001343 | formation of glycosidic bonds, GlycosylTransferases: GTnc aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation xylogalacturonan biosynthesis intracellular organelle part | details |
| TreatCFM001473 | formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: DBP flavin biosynthesis I (bacteria and plants) GDP-mannose transmembrane transport GDP-mannose transmembrane transporter activity intramolecular transferase activity cation binding Amino sugar and nucleotide sugar metabolism phosphoprotein phosphatase activity cellulose biosynthetic process carbohydrate transport cell cell redox homeostasis | details |
| TreatCFM001543 | formation of glycosidic bonds, GlycosylTransferases: GTnc glutathione peroxidase activity Arachidonic acid metabolism glutathione-peroxide redox reactions reactive oxygen species degradation aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) NAD/NADH phosphorylation and dephosphorylation NADH dehydrogenase (ubiquinone) activity DNA replication intracellular part oxidation-reduction process response to oxidative stress cellular oxidant detoxification | details |
| TreatCFM002020 | sphingomyelin phosphodiesterase activity acyl-[acyl-carrier-protein] desaturase activity dCMP deaminase activity pyrimidine nucleotide metabolic process hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 external side of plasma membrane homogalacturonan degradation oleate biosynthesis I (plants) Pyrimidine metabolism Ras signaling pathway Fatty acid metabolism aspartyl esterase activity pectinesterase inhibitor activity pectinesterase activity small GTPase mediated signal transduction pectin catabolic process cell wall modification response to salt stress multidimensional cell growth negative regulation of catalytic activity fatty acid biosynthetic process | details |
Expression profiles
 Show details about module gene expression profiling |