TreatCFM001433's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| determination of bilateral symmetry | 0.008794165 | GO:0009855 |
| meristem initiation | 0.008794165 | GO:0010014 |
| xylem development | 0.008794165 | GO:0010089 |
| polarity specification of adaxial/abaxial axis | 0.008794165 | GO:0009944 |
| radial pattern formation | 0.008794165 | GO:0009956 |
| xylem and phloem pattern formation | 0.010990269 | GO:0010051 |
| Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III | 0.014598507 | kinase family |
| Protein_kinases_phosphatases, PPC:4.2.4: SNF1 Related Protein Kinase (SnRK) | 0.014598507 | kinase family |
| cell differentiation | 0.017388407 | GO:0030154 |
| protein phosphorylation | 0.017388407 | GO:0006468 |
| Transcription_related, Transcription factor: HB | 0.024250095 | TF family |
| carbohydrate transport | 0.025195926 | GO:0008643 |
| Spliceosome | 0.029426413 | KEGG pathway |
| substrate-specific transmembrane transporter activity | 0.03273461 | GO:0022891 |
| transcription regulatory region DNA binding | 0.03273461 | GO:0044212 |
| mRNA splicing, via spliceosome | 0.035795603 | GO:0000398 |
| spliceosomal complex | 0.042818484 | GO:0005681 |
| integral component of membrane | 0.042818484 | GO:0016021 |
| plant-type vacuole membrane | 0.042818484 | GO:0009705 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001687 | AT4G03120 (2.00E-22) | C2H2 and C2HC zinc fingers superfamily protein |
| CRO_T005878 | AT2G20780 (2.00E-16) | Major facilitator superfamily protein |
| CRO_T009458 | AT1G30490 (0) | PHV|PHAVOLUTA |
| CRO_T012967 | AT4G23060 (0.00000006) | IQD22|IQ-domain 22 |
| CRO_T014497 | AT2G42290 (9.00E-58) | Leucine-rich repeat protein kinase family protein |
| CRO_T023955 | AT1G30270 (0) | CIPK23|CBL-interacting protein kinase 23; LKS1|LOW-K+-SENSITIVE 1; PKS17|SOS2-like protein kinase 17; SnRK3.23|SNF1-RELATED PROTEIN KINASE 3.23 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001994 | floral organ development UDP-N-acetylglucosamine biosynthetic process gametophyte development regulation of meristem growth receptor serine/threonine kinase binding UDP-N-acetylglucosamine diphosphorylase activity D-alanine-D-alanine ligase activity double-strand break repair via homologous recombination UDP-N-acetyl-D-glucosamine biosynthesis II UDP-glucose biosynthesis stachyose degradation sucrose biosynthesis II protein self-association Amino sugar and nucleotide sugar metabolism maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Transcription_related, Transcription regulator: SNF2 Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII metal ion binding organic cyclic compound binding heterocyclic compound binding | details |
| TreatCFM002084 | xylem development determination of bilateral symmetry radial pattern formation meristem initiation polarity specification of adaxial/abaxial axis guanosine nucleotides degradation I guanosine nucleotides degradation II pyrimidine salvage pathway xylem and phloem pattern formation U6 snRNP Lsm1-7-Pat1 complex adenosine nucleotides degradation I Protein_kinases_phosphatases, PPC:1.14.2: Receptor Like Cytoplasmic Kinase IX cell differentiation 5'-nucleotidase activity U4/U6 x U5 tri-snRNP complex precatalytic spliceosome cytoplasmic mRNA processing body cytosol catalytic step 2 spliceosome viral nucleocapsid transcription regulatory region DNA binding mRNA splicing, via spliceosome Transcription_related, Transcription factor: HB response to stress Proteasome lipid binding dephosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |