TreatCFM001475's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Transcription_related, Transcription factor: VOZ | 0.001063908 | TF family |
| NOD-like receptor signaling pathway | 0.002657217 | KEGG pathway |
| defense response to bacterium, incompatible interaction | 0.016136545 | GO:0009816 |
| long-day photoperiodism, flowering | 0.016136545 | GO:0048574 |
| positive regulation of long-day photoperiodism, flowering | 0.016136545 | GO:0048578 |
| cold acclimation | 0.016136545 | GO:0009631 |
| Transcription_related, Transcription factor: HB | 0.019840987 | TF family |
| response to heat | 0.030728841 | GO:0009408 |
| sulfate assimilation | 0.030728841 | GO:0000103 |
| positive regulation of transcription, DNA-templated | 0.030728841 | GO:0045893 |
| response to water deprivation | 0.030728841 | GO:0009414 |
| RNA secondary structure unwinding | 0.030728841 | GO:0010501 |
| cellular response to oxidative stress | 0.030728841 | GO:0034599 |
| rRNA processing | 0.030728841 | GO:0006364 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T011898 | AT1G07060 (2.00E-36) | DFO|DSB formation |
| CRO_T017498 | AT4G03520 (3.00E-21) | TRXm2|thioredoxin m2 |
| CRO_T017570 | AT1G28520 (6.00E-165) | ATVOZ1|VASCULAR PLANT ONE ZINC FINGER PROTEIN |
| CRO_T023831 | AT3G09720 (0) | RH57|RNA helicase 57 |
| CRO_T031437 | AT1G28420 (3.00E-86) | HB-1|homeobox-1; RLT1|RINGLET 1 |
| CRO_T033356 | AT5G59200 (2.00E-175) | OTP80|ORGANELLE TRANSCRIPT PROCESSING 80 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001363 | Ubiquitin_Proteasome_system, E3 adaptor: DWD S-adenosyl-L-methionine cycle II 2'-deoxymugineic acid phytosiderophore biosynthesis L-methionine degradation I (to L-homocysteine) L-methionine salvage cycle I (bacteria and plants) L-methionine salvage cycle II (plants) S-adenosyl-L-methionine biosynthesis ethylene biosynthesis I (plants) anaphase-promoting complex binding methionine adenosyltransferase activity ubiquitin-protein transferase activator activity potassium ion transmembrane transporter activity NOD-like receptor signaling pathway oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | details |
| TreatCFM001402 | Transcription_related, Transcription factor: HB Plant-pathogen interaction calcium-dependent cysteine-type endopeptidase activity phosphatidylinositol binding | details |
| TreatCFM002102 | DNA replication core promoter sequence-specific DNA binding 5'-3' exonuclease activity 5'-flap endonuclease activity ribose-5-phosphate isomerase activity transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding DNA replication, removal of RNA primer pentose-phosphate shunt, non-oxidative branch DNA binding transcription from RNA polymerase II promoter positive regulation of transcription from RNA polymerase II promoter base-excision repair RNA secondary structure unwinding rRNA processing nucleic acid phosphodiester bond hydrolysis Transcription_related, Transcription factor: MYB | details |
Expression profiles
 Show details about module gene expression profiling |