TreatCFM001620's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Protein_kinases_phosphatases, PPC:1.10.1: Receptor Like Cytoplasmic Kinase VI | 0.002892987 | kinase family |
| iron-sulfur cluster assembly | 0.014865034 | GO:0016226 |
| Spliceosome | 0.034245433 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001850 | AT5G61040 (4.00E-41) | unknown protein |
| CRO_T009490 | - | - |
| CRO_T009775 | AT4G19540 (2.00E-23) | INDH|iron-sulfur protein required for NADH dehydrogenase; INDL|IND1(iron-sulfur protein required for NADH dehydrogenase)-like |
| CRO_T014093 | AT5G61570 (7.00E-63) | Protein kinase superfamily protein |
| CRO_T016103 | AT3G21100 (2.00E-31) | RNA-binding (RRM/RBD/RNP motifs) family protein |
| CRO_T020657 | AT1G74530 (7.00E-12) | unknown protein |
| CRO_T032603 | AT4G01030 (9.00E-113) | pentatricopeptide (PPR) repeat-containing protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000542 | chloroplast thylakoid membrane Photosynthesis photosynthesis light reactions cytochrome b6f complex assembly respiratory electron transport chain photosynthetic electron transport in photosystem II photosystem II electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity protein-chromophore linkage electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity chlorophyll binding | details |
| TreatCFM001461 | Protein_kinases_phosphatases, PPC:1.8.1: Leucine Rich Repeat Kinase I single-organism developmental process anatomical structure development regulation of cellular process Transcription_related, Transcription factor: HB | details |
| TreatCFM001462 | negative regulation of apoptotic process entrainment of circadian clock mitochondrial intermembrane space chromatin response to UV-B iron-sulfur cluster assembly cutin biosynthesis sporopollenin precursors biosynthesis suberin monomers biosynthesis photoreceptor activity signal transduction | details |
Expression profiles
 Show details about module gene expression profiling |