TreatCFM001690's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| γ-glutamyl cycle | 0.005909729 | plantCyc |
| plastid-encoded plastid RNA polymerase complex | 0.006072695 | GO:0000427 |
| succinate dehydrogenase (ubiquinone) activity | 0.008044024 | GO:0008177 |
| 3 iron, 4 sulfur cluster binding | 0.008044024 | GO:0051538 |
| transcription from plastid promoter | 0.008091544 | GO:0042793 |
| thylakoid membrane organization | 0.008091544 | GO:0010027 |
| peptidyl-lysine monomethylation | 0.008091544 | GO:0018026 |
| plastid chromosome | 0.013147787 | GO:0009508 |
| protein-lysine N-methyltransferase activity | 0.013934735 | GO:0016279 |
| tricarboxylic acid cycle | 0.014136159 | GO:0006099 |
| chloroplast organization | 0.014136159 | GO:0009658 |
| aerobic respiration I (cytochrome c) | 0.016203795 | plantCyc |
| aerobic respiration III (alternative oxidase pathway) | 0.016203795 | plantCyc |
| TCA cycle II (plants and fungi) | 0.016203795 | plantCyc |
| chloroplast thylakoid | 0.026245109 | GO:0009534 |
| 2 iron, 2 sulfur cluster binding | 0.028091746 | GO:0051537 |
| 4 iron, 4 sulfur cluster binding | 0.028233492 | GO:0051539 |
| Ubiquitin_Proteasome_system, E3 adaptor: F-box | 0.036841041 | ubs family |
| mitochondrial inner membrane | 0.037252367 | GO:0005743 |
| Carbon metabolism | 0.047108101 | KEGG pathway |
| electron carrier activity | 0.048491349 | GO:0009055 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T006620 | AT5G40650 (3.00E-130) | SDH2-2|succinate dehydrogenase 2-2 |
| CRO_T011915 | AT3G02910 (2.00E-55) | AIG2-like (avirulence induced gene) family protein |
| CRO_T015216 | AT1G51570 (0) | Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein |
| CRO_T021041 | AT4G20130 (3.00E-57) | PTAC14|plastid transcriptionally active 14 |
| CRO_T023407 | - | - |
| CRO_T032735 | AT3G12350 (8.00E-28) | F-box family protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001227 | rRNA methylation mitochondrial proton-transporting ATP synthase complex succinate dehydrogenase (ubiquinone) activity 3 iron, 4 sulfur cluster binding rRNA methyltransferase activity adenosine ribonucleotides de novo biosynthesis aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) TCA cycle II (plants and fungi) ATP synthesis coupled proton transport tricarboxylic acid cycle cobalt ion binding proton-transporting ATP synthase activity, rotational mechanism 2 iron, 2 sulfur cluster binding zinc ion binding 4 iron, 4 sulfur cluster binding | details |
| TreatCFM001366 | pyruvate decarboxylation to acetyl CoA acetyl-CoA biosynthetic process from pyruvate pyruvate dehydrogenase (acetyl-transferring) activity iron-sulfur cluster assembly 4 iron, 4 sulfur cluster binding Carbon metabolism | details |
| TreatCFM002161 | γ-glutamyl cycle protein targeting to membrane vesicle fusion biological regulation vesicle docking cytoplasmic translation peptidyl-tyrosine phosphorylation SNARE interactions in vesicular transport adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII Transcription_related, Transcription regulator: SNF2 SNARE binding non-membrane spanning protein tyrosine kinase activity SNAP receptor activity | details |
Expression profiles
 Show details about module gene expression profiling |