TreatCFM001759's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| aspartyl-tRNA aminoacylation | 0.002955301 | GO:0006422 |
| system development | 0.004431642 | GO:0048731 |
| aspartate-tRNA ligase activity | 0.006072695 | GO:0004815 |
| vindoline and vinblastine biosynthesis | 0.008658466 | plantCyc |
| MAPK signaling pathway | 0.010624943 | KEGG pathway |
| Aminoacyl-tRNA biosynthesis | 0.016944738 | KEGG pathway |
| cell part | 0.026283137 | GO:0044464 |
| cellular process | 0.047443232 | GO:0009987 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001330 | AT1G66330 (5.00E-115) | senescence-associated family protein |
| CRO_T008772 | AT2G36690 (6.00E-46) | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| CRO_T009754 | AT5G55990 (1.00E-55) | CBL2|calcineurin B-like protein 2 |
| CRO_T012618 | AT1G78230 (7.00E-56) | Outer arm dynein light chain 1 protein |
| CRO_T020363 | - | - |
| CRO_T028009 | AT4G17300 (1.00E-26) | OVA8|ovule abortion 8 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM000664 | TFIIK complex Herpes simplex infection Selenocompound metabolism response to abiotic stimulus positive regulation of phosphorylation of RNA polymerase II C-terminal domain aspartyl-tRNA aminoacylation selenium compound metabolic process positive regulation of cyclin-dependent protein serine/threonine kinase activity positive regulation of ubiquitin-protein transferase activity protein neddylation S-adenosylmethionine metabolic process GDP-mannose transmembrane transport GDP-mannose transmembrane transporter activity cullin family protein binding aspartate-tRNA ligase activity ubiquitin-like protein binding vacuolar transport cyclin-dependent protein serine/threonine kinase regulator activity positive regulation of transcription from RNA polymerase II promoter cyclin-dependent protein kinase holoenzyme complex ubiquitin conjugating enzyme binding transaminase activity ubiquitin ligase complex | details |
| TreatCFM001178 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: DBB phospholipid metabolic process purine nucleobase biosynthetic process 5-aminoimidazole ribonucleotide biosynthesis I phosphoribosylamine-glycine ligase activity photomorphogenesis glycopeptide alpha-N-acetylgalactosaminidase activity transcription factor activity, transcription factor binding sucrose alpha-glucosidase activity phospholipid remodeling (phosphatidylcholine, yeast) diacylglycerol and triacylglycerol biosynthesis phosphatidylcholine acyl editing Glycerophospholipid metabolism Purine metabolism transferase activity, transferring acyl groups | details |
| TreatCFM001205 | CMP-3-deoxy-D-manno-octulosonate biosynthesis Lipopolysaccharide biosynthesis | details |
| TreatCFM001758 | hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc enzyme activator activity MAPK signaling pathway NOD-like receptor signaling pathway oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor protein disulfide oxidoreductase activity system development positive regulation of catalytic activity glycerol ether metabolic process sulfate assimilation cellular response to oxidative stress cell part Starch and sucrose metabolism | details |
| TreatCFM001877 | cyanate degradation S-methyl-L-methionine cycle nuclear pore transmembrane ring Selenocompound metabolism establishment of spindle pole body localization to nuclear envelope spindle pole body duplication cyanate catabolic process Nitrogen metabolism nuclear pore organization selenium compound metabolic process system development S-adenosylmethionine metabolic process pseudouridine synthesis cyanate hydratase activity cytosol vindoline and vinblastine biosynthesis transaminase activity structural constituent of nuclear pore pseudouridine synthase activity biosynthetic process | details |
Expression profiles
 Show details about module gene expression profiling |