TreatCFM001786's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| phosphopyruvate hydratase complex | 0.007817416 | GO:0000015 |
| Cdc73/Paf1 complex | 0.007817416 | GO:0016593 |
| Transcription_related, Transcription regulator: SNF2 | 0.008130157 | TF family |
| ATP-dependent chromatin remodeling | 0.008243327 | GO:0043044 |
| organ boundary specification between lateral organs and the meristem | 0.008243327 | GO:0010199 |
| regulation of gene expression, epigenetic | 0.008243327 | GO:0040029 |
| histone methylation | 0.008243327 | GO:0016571 |
| regulation of histone H3-K4 methylation | 0.008243327 | GO:0051569 |
| negative regulation of flower development | 0.008830831 | GO:0009910 |
| phosphopyruvate hydratase activity | 0.01038411 | GO:0004634 |
| RNA polymerase II core binding | 0.01038411 | GO:0000993 |
| oxidized purine nucleobase lesion DNA N-glycosylase activity | 0.01038411 | GO:0008534 |
| DNA-dependent ATPase activity | 0.018161454 | GO:0008094 |
| gluconeogenesis I | 0.019505234 | plantCyc |
| glycolysis I (from glucose 6-phosphate) | 0.019505234 | plantCyc |
| glycolysis IV (plant cytosol) | 0.019505234 | plantCyc |
| Rubisco shunt | 0.019505234 | plantCyc |
| damaged DNA binding | 0.02488874 | GO:0003684 |
| positive regulation of transcription, DNA-templated | 0.030832643 | GO:0045893 |
| glycolytic process | 0.030832643 | GO:0006096 |
| chromatin binding | 0.034526856 | GO:0003682 |
| cytosolic small ribosomal subunit | 0.041563706 | GO:0022627 |
| DNA repair | 0.042343269 | GO:0006281 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T001407 | AT1G06150 (8.00E-93) | EMB1444|EMBRYO DEFECTIVE 1444 |
| CRO_T006254 | AT2G36530 (0) | ENO2|ENOLASE 2; LOS2|LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2 |
| CRO_T017938 | AT5G35530 (1.00E-116) | Ribosomal protein S3 family protein |
| CRO_T018829 | AT2G06210 (4.00E-148) | ELF8|EARLY FLOWERING 8; VIP6|VERNALIZATION INDEPENDENCE 6 |
| CRO_T023306 | AT5G16420 (1.00E-22) | Pentatricopeptide repeat (PPR-like) superfamily protein |
| CRO_T029437 | AT2G46020 (0) | ATBRM|BRAHMA; CHR2|CHROMATIN REMODELING 2 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001238 | phosphopantothenate biosynthesis I RNA polymerase II core binding transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly pantothenate kinase activity transcription factor TFIID complex Cdc73/Paf1 complex protein targeting to Golgi regulation of histone H3-K4 methylation Pantothenate and CoA biosynthesis coenzyme A biosynthetic process histone methylation negative regulation of flower development macromolecule metabolic process positive regulation of transcription from RNA polymerase II promoter phospholipid translocation phospholipid-translocating ATPase activity transcription regulatory region DNA binding Basal transcription factors RNA degradation primary metabolic process positive regulation of transcription, DNA-templated chromatin binding Ubiquitin_Proteasome_system, E3 adaptor: DWD | details |
| TreatCFM001922 | Protein_kinases_phosphatases, PPC:1.14.1: Crinkly 4 Like Kinase S-adenosylmethionine metabolic process S-adenosylhomocysteine metabolic process detoxification of reactive carbonyls in chloroplasts protein N-glycosylation (eukaryotic, high mannose) NF-kappa B signaling pathway N-Glycan biosynthesis | details |
| TreatCFM001952 | guanosine nucleotides degradation I guanosine nucleotides degradation II xanthine oxidase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors xanthine dehydrogenase activity RNA polymerase II core binding xanthine catabolic process histone methylation cell cycle G1/S phase transition peptidyl-proline hydroxylation regulation of cell division regulation of histone H3-K4 methylation regulation of cell growth adenosine nucleotides degradation I procollagen-proline 4-dioxygenase activity negative regulation of flower development cation transmembrane transporter activity iron ion binding Transcription_related, Transcription factor: G2-like biological regulation cation transmembrane transport Cdc73/Paf1 complex L-ascorbic acid binding Transcription_related, Transcription factor: bHLH positive regulation of transcription, DNA-templated auxin-activated signaling pathway rRNA processing Arginine and proline metabolism | details |
| TreatCFM001973 | formation of glycosidic bonds, GlycosylTransferases: GTnc reactive oxygen species degradation superoxide radicals degradation Other types of O-glycan biosynthesis deadenylation-dependent decapping of nuclear-transcribed mRNA cytoplasmic mRNA processing body assembly catalase activity response to hydrogen peroxide RNA degradation hydrogen peroxide catabolic process cytoplasmic mRNA processing body Golgi membrane Peroxisome | details |
| TreatCFM002073 | RNA polymerase II core binding protochlorophyllide reductase activity Proteasome Transcription_related, Transcription factor: ERF very long chain fatty acid biosynthesis I very long chain fatty acid biosynthesis II thylakoid membrane organization regulation of histone H3-K4 methylation negative regulation of flower development histone methylation Cdc73/Paf1 complex proteasome complex chloroplast inner membrane chloroplast organization positive regulation of transcription, DNA-templated rRNA processing proteasome-mediated ubiquitin-dependent protein catabolic process | details |
| TreatCFM002152 | spermidine synthase activity putrescine N-methyltransferase activity phosphopyruvate hydratase activity phosphopyruvate hydratase complex spermidine biosynthetic process tRNA modification glycolytic process spermidine biosynthesis I gluconeogenesis I glycolysis I (from glucose 6-phosphate) glycolysis IV (plant cytosol) Rubisco shunt Cysteine and methionine metabolism | details |
Expression profiles
 Show details about module gene expression profiling |