TreatCFM001803's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| glutamate 5-kinase activity | 0.002413564 | GO:0004349 |
| glutamate-5-semialdehyde dehydrogenase activity | 0.002413564 | GO:0004350 |
| GDP-L-galactose phosphorylase activity | 0.002413564 | GO:0080047 |
| GDP-D-glucose phosphorylase activity | 0.002413564 | GO:0080048 |
| Protein_kinases_phosphatases, PPC:1.1.3: Putative protein kinase/Putative receptor-like protein kinase | 0.002480253 | kinase family |
| L-proline biosynthetic process | 0.004432624 | GO:0055129 |
| extended VTC2 cycle | 0.004559822 | plantCyc |
| L-proline biosynthesis I | 0.004559822 | plantCyc |
| L-proline biosynthesis III | 0.004559822 | plantCyc |
| VTC2 cycle | 0.004559822 | plantCyc |
| L-Nδ-acetylornithine biosynthesis | 0.00468941 | plantCyc |
| L-ascorbate biosynthesis I (L-galactose pathway) | 0.009110216 | plantCyc |
| nucleotidyltransferase activity | 0.021832913 | GO:0016779 |
| Ascorbate and aldarate metabolism | 0.022357933 | KEGG pathway |
| NF-kappa B signaling pathway | 0.022357933 | KEGG pathway |
| Biosynthesis of amino acids | 0.030350829 | KEGG pathway |
| membrane | 0.040646932 | GO:0016020 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T015819 | AT2G33580 (7.00E-54) | LYK5|LysM-containing receptor-like kinase 5 |
| CRO_T020563 | AT4G26850 (2.00E-178) | VTC2|vitamin c defective 2 |
| CRO_T021037 | AT2G39800 (0) | P5CS1|delta1-pyrroline-5-carboxylate synthase 1 |
| CRO_T022154 | AT1G07090 (4.00E-65) | LSH6|LIGHT SENSITIVE HYPOCOTYLS 6 |
| CRO_T022610 | - | - |
| CRO_T026473 | AT4G38100 (3.00E-15) | CURT1D|CURVATURE THYLAKOID 1D |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001728 | extended VTC2 cycle heptaprenyl diphosphate biosynthesis VTC2 cycle GDP-D-glucose phosphorylase activity Transcription_related, Transcription regulator: SET transferase activity, transferring alkyl or aryl (other than methyl) groups L-ascorbate biosynthesis I (L-galactose pathway) regulation of circadian rhythm transmembrane transporter activity glucose metabolic process vegetative to reproductive phase transition of meristem Ascorbate and aldarate metabolism Terpenoid backbone biosynthesis mRNA splicing, via spliceosome positive regulation of transcription, DNA-templated | details |
| TreatCFM001813 | cellular potassium ion homeostasis abscisic acid-activated signaling pathway involved in stomatal movement NF-kappa B signaling pathway sulfonylurea receptor activity G-protein coupled receptor signaling pathway G-protein beta/gamma-subunit complex binding Protein_kinases_phosphatases, PPC:1.1.3: Putative protein kinase/Putative receptor-like protein kinase Ubiquitin_Proteasome_system, DUB: USP plant-type vacuole response to salt stress signal transducer activity | details |
Expression profiles
 Show details about module gene expression profiling |