TreatCFM001826's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| response to desiccation | 0.002127502 | GO:0009269 |
| protein tyrosine phosphatase activity | 0.003541648 | GO:0004725 |
| Transcription_related, Transcription factor: NF-YA | 0.004785112 | TF family |
| peptidyl-tyrosine dephosphorylation | 0.005047221 | GO:0035335 |
| Transcription_related, Transcription factor: MIKC | 0.006373082 | TF family |
| Antigen processing and presentation | 0.012987699 | KEGG pathway |
| Inositol phosphate metabolism | 0.012987699 | KEGG pathway |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T003313 | - | - |
| CRO_T008641 | AT1G62914 (4.00E-28) | pentatricopeptide (PPR) repeat-containing protein |
| CRO_T014441 | AT1G01470 (1.00E-52) | LEA14|LATE EMBRYOGENESIS ABUNDANT 14; LSR3|LIGHT STRESS-REGULATED 3 |
| CRO_T026655 | AT4G37940 (4.00E-75) | AGL21|AGAMOUS-like 21 |
| CRO_T030945 | AT1G17590 (3.00E-38) | NF-YA8|nuclear factor Y, subunit A8 |
| CRO_T033685 | AT3G19420 (0) | ATPEN2|PTEN 2; PTEN2A|phosphatase and TENsin homolog deleted on chromosome ten 2A |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| TreatCFM001068 | Protein_kinases_phosphatases, PPC:4.5.7: Unknown Function Kinase transcription factor TFIIF complex positive regulation of transcription initiation from RNA polymerase II promoter positive regulation of transcription elongation from RNA polymerase II promoter transcription initiation from RNA polymerase II promoter transcription factor activity, core RNA polymerase II binding Basal transcription factors Peroxisome Endocytosis | details |
| TreatCFM001147 | carbamoyl-phosphate synthase complex chloroplast stroma L-arginine biosynthesis I (via L-ornithine) UMP biosynthesis I urea cycle L-arginine biosynthesis II (acetyl cycle) ornithine-citrulline shuttle L-glutamine degradation I cytokinin metabolic process 'de novo' pyrimidine nucleobase biosynthetic process plastid organization translational termination peptidyl-tyrosine dephosphorylation glutamine metabolic process arginine biosynthetic process carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity cytokinin dehydrogenase activity translation release factor activity, codon specific Inositol phosphate metabolism Pyrimidine metabolism Zeatin biosynthesis ribosome binding protein tyrosine phosphatase activity oxidoreductase activity, acting on CH-OH group of donors RNA processing | details |
| TreatCFM001315 | glucose-6-phosphate dehydrogenase activity pentose-phosphate shunt glucose metabolic process amino acid binding NADP binding aerobic respiration I (cytochrome c) aerobic respiration III (alternative oxidase pathway) pentose phosphate pathway (oxidative branch) I TCA cycle II (plants and fungi) Carbon metabolism | details |
| TreatCFM001355 | zeaxanthin, antheraxanthin and violaxanthin interconversion Protein_kinases_phosphatases, PPC:4.5.7: Unknown Function Kinase Cell cycle - Caulobacter magnesium chelatase activity tRNA (guanine-N2-)-methyltransferase activity tRNA N2-guanine methylation cellular developmental process embryo development chloroplast organization primary metabolic process cellular metabolic process post-embryonic development organic substance metabolic process root development chaperone-mediated protein folding RNA modification | details |
| TreatCFM001422 | Transcription_related, Transcription factor: WRKY plastid organization Glutathione metabolism Plant-pathogen interaction cellular metabolic process multicellular organism development | details |
| TreatCFM001809 | Transcription_related, Transcription factor: NF-YA Antigen processing and presentation binding | details |
Expression profiles
 Show details about module gene expression profiling |